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    Slc17a1 solute carrier family 17 member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 171080, updated on 2-Nov-2024

    Summary

    Official Symbol
    Slc17a1provided by RGD
    Official Full Name
    solute carrier family 17 member 1provided by RGD
    Primary source
    RGD:620099
    See related
    EnsemblRapid:ENSRNOG00000042692 AllianceGenome:RGD:620099
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Napi-1
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in several processes, including sodium-dependent phosphate transport; urate metabolic process; and urate transport. Predicted to be active in apical plasma membrane. Orthologous to human SLC17A1 (solute carrier family 17 member 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 515.4) and Liver (RPKM 305.8) See more
    Orthologs
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    Genomic context

    See Slc17a1 in Genome Data Viewer
    Location:
    17p11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (41647332..41683078, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (41219461..41255199, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (43473048..43504645, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene H2B clustered histone 1 Neighboring gene solute carrier family 17, member 4 Neighboring gene uncharacterized LOC134482855 Neighboring gene solute carrier family 17 member 3 Neighboring gene solute carrier family 17, member 2 Neighboring gene H1.1 linker histone, cluster member

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables phosphate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables sodium:phosphate symporter activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in monoatomic anion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in phosphate ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium-dependent phosphate transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sodium-dependent phosphate transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium-dependent phosphate transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sodium-dependent phosphate transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in urate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in urate metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in urate transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in urate transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in urate transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in urate transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    is_active_in apical plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in apical plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    sodium-dependent phosphate transport protein 1
    Names
    Na(+)/PI cotransporter 1
    renal Na(+)-dependent phosphate cotransporter 1
    renal sodium-dependent phosphate transport protein 1
    renal sodium-phosphate transport protein 1
    sodium/phosphate cotransporter 1
    solute carrier family 17 (organic anion transporter), member 1
    solute carrier family 17 (sodium phosphate), member 1
    solute carrier family 17 vesicular glutamate transporter), member 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133554.2NP_598238.2  sodium-dependent phosphate transport protein 1

      See identical proteins and their annotated locations for NP_598238.2

      Status: PROVISIONAL

      Source sequence(s)
      BC078748
      UniProtKB/TrEMBL
      A0A9K3Y819, F1M6S8, Q6AZ46, Q8K3H3
      Related
      ENSRNOP00000061056.4, ENSRNOT00000066313.5
      Conserved Domains (1) summary
      TIGR00894
      Location:1464
      2A0114euk; Na(+)-dependent inorganic phosphate cotransporter

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      41647332..41683078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005495232.2 RNA Sequence

    2. XR_005495230.2 RNA Sequence

    3. XR_010058806.1 RNA Sequence

    4. XR_010058807.1 RNA Sequence

    5. XR_005495231.2 RNA Sequence

    6. XR_005495233.2 RNA Sequence