Nipsnap3b nipsnap homolog 3B [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Nipsnap3bprovided by RGD
Official Full Name: nipsnap homolog 3Bprovided by RGD
Primary source: RGD:1359688
See related: EnsemblRapid:ENSRNOG00000010332 AllianceGenome:RGD:1359688
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Nipsnap3a
Summary: Predicted to be involved in mitophagy. Predicted to be active in mitochondrion. Orthologous to several human genes including NIPSNAP3A (nipsnap homolog 3A). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Liver (RPKM 295.2), Adrenal (RPKM 139.8) and 9 other tissues See more
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Genomic context

Location:: 5q23

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (72446945..72465090)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (67637644..67669698)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (69833200..69849116)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in mitophagy	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info	PubMed

General protein information

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Preferred Names: protein NipSnap homolog 3A

Names: NIPSNAP-related protein; nipsnap homolog 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.