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    VWA8-AS1 VWA8 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

    Gene ID: 100507240, updated on 17-Jun-2024

    Summary

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    Official Symbol
    VWA8-AS1provided by HGNC
    Official Full Name
    VWA8 antisense RNA 1 (head to head)provided by HGNC
    Primary source
    HGNC:HGNC:44270
    See related
    Ensembl:ENSG00000278338 AllianceGenome:HGNC:44270
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See VWA8-AS1 in Genome Data Viewer
    Location:
    13q14.11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (41961169..41981565)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (41180425..41200821)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (42535305..42555701)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7634 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7635 Neighboring gene RNA, U6 small nuclear 74, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42518810-42519310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42519311-42519811 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:42533478-42533978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:42533979-42534479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7636 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5293 Neighboring gene uncharacterized LOC105370176 Neighboring gene lysyl-tRNA synthetase 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42575448-42575948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42575949-42576449 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7637 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7638 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5297 Neighboring gene ribosomal protein S28 pseudogene 8 Neighboring gene diacylglycerol kinase eta Neighboring gene mitogen-activated protein kinase 6 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • VWA8 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039974.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK092199, AL442203, CA310831
      Related
      ENST00000611103.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      41961169..41981565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      41180425..41200821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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