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    OR2A42 olfactory receptor family 2 subfamily A member 42 [ Homo sapiens (human) ]

    Gene ID: 402317, updated on 5-Mar-2024

    Summary

    Official Symbol
    OR2A42provided by HGNC
    Official Full Name
    olfactory receptor family 2 subfamily A member 42provided by HGNC
    Primary source
    HGNC:HGNC:31230
    See related
    Ensembl:ENSG00000212807 AllianceGenome:HGNC:31230
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
    Orthologs
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    Genomic context

    See OR2A42 in Genome Data Viewer
    Location:
    7q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (144228244..144239605, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (143925337..143936698, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 35 Neighboring gene ARHGEF35 antisense RNA 1 Neighboring gene CTAGE family member 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143901531-143902093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143902094-143902655 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:143904530-143905158 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143905159-143905786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143906415-143907042 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:143935567-143936068 Neighboring gene OR2A1 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:143947746-143948246 Neighboring gene olfactory receptor family 2 subfamily A member 20 pseudogene Neighboring gene Rho guanine nucleotide exchange factor 34, pseudogene Neighboring gene olfactory receptor family 2 subfamily A member 7

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables olfactory receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in detection of chemical stimulus involved in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    olfactory receptor 2A1/2A42
    Names
    olfactory receptor OR7-16
    olfactory receptor OR7-19
    olfactory receptor, family 2, subfamily A, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001802.3NP_001001802.2  olfactory receptor 2A1/2A42

      See identical proteins and their annotated locations for NP_001001802.2

      Status: VALIDATED

      Source sequence(s)
      AC004889
      Consensus CDS
      CCDS56515.1
      UniProtKB/Swiss-Prot
      Q6IF44, Q8NGT9, Q96R46
      UniProtKB/TrEMBL
      A0A2R8YEV3
      Related
      ENSP00000493333.1, ENST00000641810.1
      Conserved Domains (2) summary
      pfam00001
      Location:40289
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:30304
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      144228244..144239605 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654715.1 Reference GRCh38.p14 PATCHES

      Range
      182841..194199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)