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    TIAM1-AS1 TIAM1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 150051, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TIAM1-AS1provided by HGNC
    Official Full Name
    TIAM1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:54361
    See related
    Ensembl:ENSG00000237594 AllianceGenome:HGNC:54361
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See TIAM1-AS1 in Genome Data Viewer
    Location:
    21q22.11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (31559233..31560487)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (29927214..29928468)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (32931546..32932800)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene TIAM Rac1 associated GEF 1 Neighboring gene uncharacterized LOC105372777 Neighboring gene MPRA-validated peak4402 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:32710674-32711873 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:32738744-32739943 Neighboring gene MPRA-validated peak4404 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr21:32822900-32823113 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:32842913-32843876 Neighboring gene MTRES1 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32867589-32868090 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32868091-32868590 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:32894311-32894810 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr21:32917456-32918188 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32925735-32926454 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:32926455-32927174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:32929546-32930359 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32931173-32931985 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:32955714-32956498 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:32956499-32957283 Neighboring gene MPRA-validated peak4405 silencer Neighboring gene uncharacterized LOC107985488 Neighboring gene F-box and WD repeat domain containing 11 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Homology

    Clone Names

    • AP000251.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171013.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000251
      Related
      ENST00000433071.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      31559233..31560487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      29927214..29928468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001321023.2: Suppressed sequence

      Description
      NM_001321023.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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