U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00616 long intergenic non-protein coding RNA 616 [ Homo sapiens (human) ]

    Gene ID: 641365, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00616provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 616provided by HGNC
    Primary source
    HGNC:HGNC:44065
    See related
    Ensembl:ENSG00000248307 AllianceGenome:HGNC:44065
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.1) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00616 in Genome Data Viewer
    Location:
    4q28.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (138027422..138130685, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (141350884..141454194, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (138948576..139051839, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377445 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15692 Neighboring gene uncharacterized LOC107986315 Neighboring gene uncharacterized LOC105377447 Neighboring gene SLC7A11 antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139034364-139035273 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21910 Neighboring gene solute carrier family 7 member 11 Neighboring gene NANOG hESC enhancer GRCh37_chr4:139138744-139139289 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:139144028-139144638 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:139162849-139164048 Neighboring gene long intergenic non-protein coding RNA 499 Neighboring gene uncharacterized LOC124900888

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037866.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC097511, AC105310
      Related
      ENST00000514600.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      138027422..138130685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      141350884..141454194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)