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    ZDHHC3 zinc finger DHHC-type palmitoyltransferase 3 [ Homo sapiens (human) ]

    Gene ID: 51304, updated on 3-Nov-2024

    Summary

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    Official Symbol
    ZDHHC3provided by HGNC
    Official Full Name
    zinc finger DHHC-type palmitoyltransferase 3provided by HGNC
    Primary source
    HGNC:HGNC:18470
    See related
    Ensembl:ENSG00000163812 MIM:617150; AllianceGenome:HGNC:18470
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GODZ; DHHC3; DHHC-3; ZNF373
    Summary
    Enables palmitoyltransferase activity. Involved in several processes, including protein localization to membrane; protein localization to photoreceptor outer segment; and regulation of signal transduction. Located in membrane. Is active in Golgi apparatus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis (RPKM 9.5), skin (RPKM 8.8) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See ZDHHC3 in Genome Data Viewer
    Location:
    3p21.31
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (44915261..44976174, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (44930989..44991916, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (44956753..45017666, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:44925386-44926063 Neighboring gene peptidylprolyl isomerase A pseudogene 18 Neighboring gene Sharpr-MPRA regulatory region 3821 Neighboring gene transglutaminase 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:44940040-44940581 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:44975255-44976082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:44981025-44981526 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:44981527-44982026 Neighboring gene ribosomal protein L12 pseudogene 44 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:45000471-45001670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:45016646-45017190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14275 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14276 Neighboring gene exosome component 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:45068175-45068676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:45068677-45069176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:45075939-45076588 Neighboring gene C-type lectin domain family 3 member B Neighboring gene RNA, U5B small nuclear 3, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Structural Exploration on Palmitoyltransferase DHHC3 from Homo sapiens. Tang M, et al. Polymers (Basel), 2022 Jul 26. PMID 35893977, Free PMC Article
    2. Protein Acyltransferase DHHC3 Regulates Breast Tumor Growth, Oxidative Stress, and Senescence. Sharma C, et al. Cancer Res, 2017 Dec 15. PMID 29055014, Free PMC Article
    3. Palmitoylation by DHHC3 is critical for the function, expression, and stability of integrin α6β4. Sharma C, et al. Cell Mol Life Sci, 2012 Jul. PMID 22314500, Free PMC Article
    4. Antioxidant functions of DHHC3 suppress anti-cancer drug activities. Sharma C, et al. Cell Mol Life Sci, 2021 Mar. PMID 32986127, Free PMC Article
    5. zDHHC3-mediated S-palmitoylation of SLC9A2 regulates apoptosis in kidney clear cell carcinoma. Zhang X, et al. J Cancer Res Clin Oncol, 2024 Apr 15. PMID 38619631, Free PMC Article

    See all (40) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. zDHHC3-mediated S-palmitoylation of SLC9A2 regulates apoptosis in kidney clear cell carcinoma.
      Title: zDHHC3-mediated S-palmitoylation of SLC9A2 regulates apoptosis in kidney clear cell carcinoma.
    2. IFI27 Integrates Succinate and Fatty Acid Oxidation to Promote Adipocyte Thermogenic Adaption.
      Title: IFI27 Integrates Succinate and Fatty Acid Oxidation to Promote Adipocyte Thermogenic Adaption.
    3. Antioxidant functions of DHHC3 suppress anti-cancer drug activities.
      Title: Antioxidant functions of DHHC3 suppress anti-cancer drug activities.
    4. DHHC3-mediated protein palmitoylation supports breast tumor growth by modulating cellular oxidative stress and senescence.
      Title: Protein Acyltransferase DHHC3 Regulates Breast Tumor Growth, Oxidative Stress, and Senescence.
    5. HSV-1 UL20 binds to GODZ (also known as DHHC3), a Golgi apparatus-specific Asp-His-His-Cys (DHHC) zinc finger protein. a GODZ dominant-negative mutant and an inhibitor of palmitoylation reduced HSV-1 titers and altered the localization of UL20 and glycoprotein K. UL20 is palmitoylated by GODZ, and this UL20 palmitoylation is required for HSV-1 infectivity.
      Title: Binding of Herpes Simplex Virus 1 UL20 to GODZ (DHHC3) Affects Its Palmitoylation and Is Essential for Infectivity and Proper Targeting and Localization of UL20 and Glycoprotein K.
    6. In silico screening for palmitoyl substrates reveals a role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in its targeting to Rab5-positive endosomes.
      Title: In silico screening for palmitoyl substrates reveals a role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in its targeting to Rab5-positive endosomes.
    7. GODZ regulates plasma membrane targeting of DR4 and thus TRAIL/DR4-mediated apoptosis in cancer cells.
      Title: Regulation in the targeting of TRAIL receptor 1 to cell surface via GODZ for TRAIL sensitivity in tumor cells.
    8. Palmitoylation by DHHC3 is critical for the function, expression, and stability of integrin alpha6beta4.
      Title: Palmitoylation by DHHC3 is critical for the function, expression, and stability of integrin α6β4.
    9. Data conclude that GODZ encodes a Ca(2+) transport protein in addition to its ability to palmitoylate protein substrates.
      Title: Golgi-specific DHHC zinc finger protein GODZ mediates membrane Ca2+ transport.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ20209, FLJ45940, DKFZp313D2314

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables palmitoyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein-cysteine S-myristoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein-cysteine S-stearoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in TRAIL-activated apoptotic signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lipoprotein localization to membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in peptidyl-L-cysteine S-palmitoylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of receptor localization to synapse ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of synaptic transmission, GABAergic ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of toll-like receptor 9 signaling pathway IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein localization to membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in protein localization to photoreceptor outer segment IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein localization to plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein palmitoylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein palmitoylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein targeting to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of G protein-coupled receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi membrane TAS
    Traceable Author Statement
    more info
    		  
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane HDA PubMed 

    General protein information

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    Preferred Names
    palmitoyltransferase ZDHHC3
    Names
    DHHC1 protein
    Golgi apparatus-specific protein with DHHC zinc finger domain
    acyltransferase ZDHHC3
    golgi-specific DHHC Zinc Finger Protein
    zinc finger DHHC domain-containing protein 3
    zinc finger DHHC-type containing 3
    zinc finger protein 373
    zinc finger, DHHC domain containing 3
    NP_001128651.1
    NP_001317690.1
    NP_001336305.1
    NP_001336306.1
    NP_001336307.1
    NP_001336308.1
    NP_001336309.1
    NP_001336310.1
    NP_057682.1
    XP_016862050.1
    XP_016862051.1
    XP_016862057.1
    XP_024309326.2
    XP_024309327.2
    XP_047304216.1
    XP_047304217.1
    XP_047304218.1
    XP_047304219.1
    XP_047304220.1
    XP_047304221.1
    XP_047304222.1
    XP_047304224.1
    XP_047304225.1
    XP_047304226.1
    XP_047304227.1
    XP_054202729.1
    XP_054202730.1
    XP_054202731.1
    XP_054202732.1
    XP_054202733.1
    XP_054202734.1
    XP_054202735.1
    XP_054202736.1
    XP_054202737.1
    XP_054202738.1
    XP_054202739.1
    XP_054202740.1
    XP_054202741.1
    XP_054202742.1
    XP_054202743.1
    XP_054202744.1
    XP_054202745.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135179.2 → NP_001128651.1  palmitoyltransferase ZDHHC3 isoform 1

      See identical proteins and their annotated locations for NP_001128651.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1), as well as variants 9 and 10, encodes isoform 1.
      Source sequence(s)
      AA778122, AC098649, AC104165, AK000216, BC015467, DB636483
      Consensus CDS
      CCDS46811.1
      UniProtKB/Swiss-Prot
      Q53A17, Q96BL0, Q9NYG2
      Related
      ENSP00000395502.2, ENST00000424952.7
      Conserved Domains (1) summary
      pfam01529
      Location:128 → 255
      DHHC; DHHC palmitoyltransferase

    2. NM_001330761.2 → NP_001317690.1  palmitoyltransferase ZDHHC3 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) represents the longest transcript and encodes isoform 4.
      Source sequence(s)
      AC098649, AC104165
      Consensus CDS
      CCDS87071.1
      UniProtKB/TrEMBL
      F8W6M3
      Related
      ENSP00000345268.4, ENST00000342790.8
      Conserved Domains (1) summary
      pfam01529
      Location:162 → 289
      DHHC; DHHC palmitoyltransferase

    3. NM_001349376.2 → NP_001336305.1  palmitoyltransferase ZDHHC3 isoform 5

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) encodes the longest isoform (5).
      Source sequence(s)
      AC098649, AC104165
      Consensus CDS
      CCDS93256.1
      UniProtKB/TrEMBL
      A0A994J7J2
      Related
      ENSP00000516198.1, ENST00000705994.1
      Conserved Domains (2) summary
      pfam01529
      Location:128 → 283
      zf-DHHC; DHHC palmitoyltransferase
      cl19890
      Location:52 → 194
      zf-DHHC; DHHC palmitoyltransferase

    4. NM_001349377.2 → NP_001336306.1  palmitoyltransferase ZDHHC3 isoform 6

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) encodes isoform 6.
      Source sequence(s)
      AC098649, AC104165
      Consensus CDS
      CCDS46810.1
      UniProtKB/TrEMBL
      H0Y6A5
      Related
      ENSP00000404108.2, ENST00000339420.7
      Conserved Domains (1) summary
      pfam01529
      Location:128 → 255
      zf-DHHC; DHHC palmitoyltransferase

    5. NM_001349378.2 → NP_001336307.1  palmitoyltransferase ZDHHC3 isoform 7

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) encodes isoform 7.
      Source sequence(s)
      AC098649, AC104165
      Conserved Domains (1) summary
      pfam01529
      Location:54 → 209
      zf-DHHC; DHHC palmitoyltransferase

    6. NM_001349379.2 → NP_001336308.1  palmitoyltransferase ZDHHC3 isoform 8

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8) encodes isoform 8.
      Source sequence(s)
      AC098649, AC104165
      Conserved Domains (1) summary
      pfam01529
      Location:54 → 181
      DHHC; DHHC palmitoyltransferase

    7. NM_001349380.2 → NP_001336309.1  palmitoyltransferase ZDHHC3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (9), as well as variants 1 and 10, encodes isoform 1.
      Source sequence(s)
      AC098649, AC104165
      Consensus CDS
      CCDS46811.1
      UniProtKB/Swiss-Prot
      Q53A17, Q96BL0, Q9NYG2
      Conserved Domains (1) summary
      pfam01529
      Location:128 → 255
      DHHC; DHHC palmitoyltransferase

    8. NM_001349381.2 → NP_001336310.1  palmitoyltransferase ZDHHC3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (10), as well as variants 1 and 9, encodes isoform 1.
      Source sequence(s)
      AC098649, AC104165
      Consensus CDS
      CCDS46811.1
      UniProtKB/Swiss-Prot
      Q53A17, Q96BL0, Q9NYG2
      Conserved Domains (1) summary
      pfam01529
      Location:128 → 255
      DHHC; DHHC palmitoyltransferase

    9. NM_016598.3 → NP_057682.1  palmitoyltransferase ZDHHC3 isoform 2

      See identical proteins and their annotated locations for NP_057682.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) encodes isoform 2.
      Source sequence(s)
      AA778122, AC098649, AC104165, AF247703, AK000216, DB636483
      Consensus CDS
      CCDS2724.1
      UniProtKB/Swiss-Prot
      Q9NYG2
      Related
      ENSP00000296127.3, ENST00000296127.7
      Conserved Domains (2) summary
      pfam01529
      Location:129 → 283
      zf-DHHC; DHHC palmitoyltransferase
      cl19890
      Location:52 → 194
      zf-DHHC; DHHC palmitoyltransferase

    RNA

    1. NR_146161.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098649, AC104165

    2. NR_146162.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098649, AC104165

    3. NR_146163.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098649, AC104165

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      44915261..44976174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017006562.2 → XP_016862051.1  palmitoyltransferase ZDHHC3 isoform X6

    2. XM_017006561.2 → XP_016862050.1  palmitoyltransferase ZDHHC3 isoform X4

    3. XM_047448265.1 → XP_047304221.1  palmitoyltransferase ZDHHC3 isoform X5

    4. XM_047448264.1 → XP_047304220.1  palmitoyltransferase ZDHHC3 isoform X3

    5. XM_047448263.1 → XP_047304219.1  palmitoyltransferase ZDHHC3 isoform X2

    6. XM_047448260.1 → XP_047304216.1  palmitoyltransferase ZDHHC3 isoform X1

    7. XM_047448266.1 → XP_047304222.1  palmitoyltransferase ZDHHC3 isoform X14

      UniProtKB/TrEMBL
      A0A994J7J2

    8. XM_047448261.1 → XP_047304217.1  palmitoyltransferase ZDHHC3 isoform X1

    9. XM_047448262.1 → XP_047304218.1  palmitoyltransferase ZDHHC3 isoform X1

    10. XM_017006568.1 → XP_016862057.1  palmitoyltransferase ZDHHC3 isoform X13

    11. XM_047448268.1 → XP_047304224.1  palmitoyltransferase ZDHHC3 isoform X9

    12. XM_024453558.2 → XP_024309326.2  palmitoyltransferase ZDHHC3 isoform X7

    13. XM_047448271.1 → XP_047304227.1  palmitoyltransferase ZDHHC3 isoform X12

    14. XM_047448270.1 → XP_047304226.1  palmitoyltransferase ZDHHC3 isoform X11

    15. XM_047448269.1 → XP_047304225.1  palmitoyltransferase ZDHHC3 isoform X10

    16. XM_024453559.2 → XP_024309327.2  palmitoyltransferase ZDHHC3 isoform X8

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_009646197.1 Reference GRCh38.p14 PATCHES

      Range
      440611..451168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      44930989..44991916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054346762.1 → XP_054202737.1  palmitoyltransferase ZDHHC3 isoform X6

    2. XM_054346759.1 → XP_054202734.1  palmitoyltransferase ZDHHC3 isoform X4

    3. XM_054346760.1 → XP_054202735.1  palmitoyltransferase ZDHHC3 isoform X5

    4. XM_054346758.1 → XP_054202733.1  palmitoyltransferase ZDHHC3 isoform X3

    5. XM_054346757.1 → XP_054202732.1  palmitoyltransferase ZDHHC3 isoform X2

    6. XM_054346754.1 → XP_054202729.1  palmitoyltransferase ZDHHC3 isoform X1

    7. XM_054346763.1 → XP_054202738.1  palmitoyltransferase ZDHHC3 isoform X14

      UniProtKB/TrEMBL
      H0Y6A5

    8. XM_054346761.1 → XP_054202736.1  palmitoyltransferase ZDHHC3 isoform X14

      UniProtKB/TrEMBL
      A0A994J7J2

    9. XM_054346755.1 → XP_054202730.1  palmitoyltransferase ZDHHC3 isoform X1

    10. XM_054346756.1 → XP_054202731.1  palmitoyltransferase ZDHHC3 isoform X1

    11. XM_054346770.1 → XP_054202745.1  palmitoyltransferase ZDHHC3 isoform X13

    12. XM_054346766.1 → XP_054202741.1  palmitoyltransferase ZDHHC3 isoform X9

    13. XM_054346764.1 → XP_054202739.1  palmitoyltransferase ZDHHC3 isoform X7

    14. XM_054346769.1 → XP_054202744.1  palmitoyltransferase ZDHHC3 isoform X12

    15. XM_054346768.1 → XP_054202743.1  palmitoyltransferase ZDHHC3 isoform X11

    16. XM_054346767.1 → XP_054202742.1  palmitoyltransferase ZDHHC3 isoform X10

    17. XM_054346765.1 → XP_054202740.1  palmitoyltransferase ZDHHC3 isoform X8

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001135180.1: Suppressed sequence

      Description
      NM_001135180.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NYG2.2 GenPept UniProtKB/Swiss-Prot:Q9NYG2

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