U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    STX17 syntaxin 17 [ Homo sapiens (human) ]

    Gene ID: 55014, updated on 28-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    STX17provided by HGNC
    Official Full Name
    syntaxin 17provided by HGNC
    Primary source
    HGNC:HGNC:11432
    See related
    Ensembl:ENSG00000136874 MIM:604204; AllianceGenome:HGNC:11432
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Enables SNAP receptor activity; SNARE binding activity; and protein phosphatase binding activity. Involved in several processes, including autophagosome membrane docking; endoplasmic reticulum to Golgi vesicle-mediated transport; and endoplasmic reticulum-Golgi intermediate compartment organization. Acts upstream of or within protein localization to phagophore assembly site. Located in several cellular components, including autophagosome membrane; endoplasmic reticulum-Golgi intermediate compartment; and mitochondria-associated endoplasmic reticulum membrane contact site. Part of SNARE complex. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in thyroid (RPKM 7.7), skin (RPKM 7.1) and 25 other tissues See more
    Orthologs
    mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See STX17 in Genome Data Viewer
    Location:
    9q31.1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (99906654..99974534)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (112078304..112146158)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (102668936..102736816)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20129 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:102584885-102585397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20130 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:102595258-102596457 Neighboring gene nuclear receptor subfamily 4 group A member 3 Neighboring gene STX17 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20131 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28716 Neighboring gene NANOG hESC enhancer GRCh37_chr9:102678782-102679392 Neighboring gene endoplasmic reticulum protein 44 Neighboring gene uncharacterized LOC105376176 Neighboring gene UPF3A pseudogene 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Syntaxin 17 recruitment to mature autophagosomes is temporally regulated by PI4P accumulation. Shinoda S, et al. Elife, 2024 Jun 4. PMID 38831696, Free PMC Article
    2. The subcellular localization of syntaxin 17 varies among different cell types and is altered in some malignant cells. Zhang Q, et al. J Histochem Cytochem, 2005 Nov. PMID 15956034
    3. Polymorphisms in the syntaxin 17 gene are not associated with human cutaneous malignant melanoma. Zhao ZZ, et al. Melanoma Res, 2009 Apr. PMID 19209086, Free PMC Article
    4. A role for the ancient SNARE syntaxin 17 in regulating mitochondrial division. Arasaki K, et al. Dev Cell, 2015 Feb 9. PMID 25619926
    5. The Autophagosomal SNARE Protein Syntaxin 17 Is an Essential Factor for the Hepatitis C Virus Life Cycle. Ren H, et al. J Virol, 2016 Jul 1. PMID 27099307, Free PMC Article

    See all (80) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Syntaxin 17 recruitment to mature autophagosomes is temporally regulated by PI4P accumulation.
      Title: Syntaxin 17 recruitment to mature autophagosomes is temporally regulated by PI4P accumulation.
    2. Exacerbation of atherosclerosis by STX17 knockdown: Unravelling the role of autophagy and inflammation.
      Title: Exacerbation of atherosclerosis by STX17 knockdown: Unravelling the role of autophagy and inflammation.
    3. SLC34A2 promotes cell proliferation by activating STX17-mediated autophagy in esophageal squamous cell carcinoma.
      Title: SLC34A2 promotes cell proliferation by activating STX17-mediated autophagy in esophageal squamous cell carcinoma.
    4. Human YKT6 forms priming complex with STX17 and SNAP29 to facilitate autophagosome-lysosome fusion.
      Title: Human YKT6 forms priming complex with STX17 and SNAP29 to facilitate autophagosome-lysosome fusion.
    5. The STX17-SNAP47-VAMP7/VAMP8 complex is the default SNARE complex mediating autophagosome-lysosome fusion.
      Title: The STX17-SNAP47-VAMP7/VAMP8 complex is the default SNARE complex mediating autophagosome-lysosome fusion.
    6. ULK phosphorylation of STX17 controls autophagosome maturation via FLNA.
      Title: ULK phosphorylation of STX17 controls autophagosome maturation via FLNA.
    7. Acetylation of STX17 (syntaxin 17) controls autophagosome maturation.
      Title: Acetylation of STX17 (syntaxin 17) controls autophagosome maturation.
    8. Long non-coding RNA XIST confers aggressive progression via miR-361-3p/STX17 in retinoblastoma cells.
      Title: Long non-coding RNA XIST confers aggressive progression via miR-361-3p/STX17 in retinoblastoma cells.
    9. A SNARE protein Syntaxin 17 captures CFTR to potentiate autophagosomal clearance under stress.
      Title: A SNARE protein Syntaxin 17 captures CFTR to potentiate autophagosomal clearance under stress.
    10. Circular RNA circ_0000034 upregulates STX17 level to promote human retinoblastoma development via inhibiting miR-361-3p.
      Title: Circular RNA circ_0000034 upregulates STX17 level to promote human retinoblastoma development via inhibiting miR-361-3p.
    Submit: New GeneRIF Correction See all GeneRIFs (36)

    Phenotypes

    Go to the top of the page Help

    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • FLJ20651, MGC102796, MGC126613, MGC126615

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables SNAP receptor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables SNARE binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein phosphatase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in autophagosome maturation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in autophagosome maturation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in autophagosome membrane docking IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in endoplasmic reticulum-Golgi intermediate compartment organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within protein localization to phagophore assembly site IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vesicle docking IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vesicle fusion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of HOPS complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of SNARE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of SNARE complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in autophagosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in autophagosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT located_in lysosomal membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondria-associated endoplasmic reticulum membrane contact site IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HTP PubMed 
    NOT located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    NOT located_in rough endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in smooth endoplasmic reticulum membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    syntaxin-17

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017919.3 → NP_060389.2  syntaxin-17

      See identical proteins and their annotated locations for NP_060389.2

      Status: VALIDATED

      Source sequence(s)
      AI375996, AL358937, BC101566, DC318495
      Consensus CDS
      CCDS6745.1
      UniProtKB/Swiss-Prot
      P56962, Q4VXC2
      UniProtKB/TrEMBL
      B3KTA5, Q2TAB5
      Related
      ENSP00000259400.6, ENST00000259400.11
      Conserved Domains (2) summary
      COG5325
      Location:2 → 228
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      99906654..99974534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047423551.1 → XP_047279507.1  syntaxin-17 isoform X1

      UniProtKB/Swiss-Prot
      P56962, Q4VXC2
      Related
      ENSP00000433484.1, ENST00000534052.1

    2. XM_011518821.4 → XP_011517123.1  syntaxin-17 isoform X1

      See identical proteins and their annotated locations for XP_011517123.1

      UniProtKB/Swiss-Prot
      P56962, Q4VXC2
      UniProtKB/TrEMBL
      B3KTA5, Q2TAB5
      Conserved Domains (2) summary
      COG5325
      Location:2 → 228
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    3. XM_047423553.1 → XP_047279509.1  syntaxin-17 isoform X3

      Related
      ENSP00000436666.1, ENST00000524405.5

    4. XM_011518820.4 → XP_011517122.1  syntaxin-17 isoform X1

      See identical proteins and their annotated locations for XP_011517122.1

      UniProtKB/Swiss-Prot
      P56962, Q4VXC2
      UniProtKB/TrEMBL
      B3KTA5, Q2TAB5
      Conserved Domains (2) summary
      COG5325
      Location:2 → 228
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    5. XM_047423552.1 → XP_047279508.1  syntaxin-17 isoform X2

    6. XM_011518823.4 → XP_011517125.1  syntaxin-17 isoform X2

      See identical proteins and their annotated locations for XP_011517125.1

      Conserved Domains (1) summary
      cd15846
      Location:73 → 134
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      112078304..112146158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054363201.1 → XP_054219176.1  syntaxin-17 isoform X1

      UniProtKB/Swiss-Prot
      P56962, Q4VXC2

    2. XM_054363199.1 → XP_054219174.1  syntaxin-17 isoform X1

      UniProtKB/Swiss-Prot
      P56962, Q4VXC2

    3. XM_054363200.1 → XP_054219175.1  syntaxin-17 isoform X1

      UniProtKB/Swiss-Prot
      P56962, Q4VXC2

    4. XM_054363202.1 → XP_054219177.1  syntaxin-17 isoform X2

    5. XM_054363203.1 → XP_054219178.1  syntaxin-17 isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P56962.2 GenPept UniProtKB/Swiss-Prot:P56962

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous