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    BTF3P12 basic transcription factor 3 pseudogene 12 [ Homo sapiens (human) ]

    Gene ID: 652963, updated on 17-Sep-2024

    Summary

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    Official Symbol
    BTF3P12provided by HGNC
    Official Full Name
    basic transcription factor 3 pseudogene 12provided by HGNC
    Primary source
    HGNC:HGNC:1127
    See related
    MIM:603738; AllianceGenome:HGNC:1127
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BTF3L2; HUMBTFC
    Summary
    This locus represents a putative member of the BTF3 family of transcription factors. With no transcription yet documented, it is thought that this locus represents a pseudogene. [provided by RefSeq]
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    Genomic context

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    See BTF3P12 in Genome Data Viewer
    Location:
    8q13.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (70273263..70274168)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (70703185..70704090)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (71185498..71186403)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5072 Neighboring gene RNA, U1 small nuclear 101, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:71017144-71017651 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:71036348-71036532 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27505 Neighboring gene H2A.Z histone pseudogene 2 Neighboring gene nuclear receptor coactivator 2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:71060854-71061591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27506 Neighboring gene NANOG hESC enhancer GRCh37_chr8:71144189-71144690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:71203727-71204467 Neighboring gene RNY3 pseudogene 14 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:71302664-71303031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19269 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27507 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19271 Neighboring gene ribosomal protein S18 pseudogene 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic structure of the putative BTF3 transcription factor. Kanno M, et al. Gene, 1992 Aug 15. PMID 1386332

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • basic transcription factor 3, like 2
    • basic transcription factor 3, pseudogene
    • basic transcription factor 3-like 2, pseudogene
    • lambda h23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_005366.5 

      Range
      101..1006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      70273263..70274168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      70703185..70704090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001209.1: Suppressed sequence

      Description
      NM_001209.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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