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    FAM157A family with sequence similarity 157 member A [ Homo sapiens (human) ]

    Gene ID: 728262, updated on 17-Sep-2024

    Summary

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    Official Symbol
    FAM157Aprovided by HGNC
    Official Full Name
    family with sequence similarity 157 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:34079
    See related
    Ensembl:ENSG00000290937 AllianceGenome:HGNC:34079
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GTF2IP18
    Expression
    Broad expression in bone marrow (RPKM 14.6), testis (RPKM 7.7) and 23 other tissues See more
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    Genomic context

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    See FAM157A in Genome Data Viewer
    Location:
    3q29
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (198153206..198222513)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200882974..200954215)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (197880077..197949384)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene FSHD region gene 2 family member F, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197847723-197848224 Neighboring gene tubulin beta 8 class VIII pseudogene 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197860268-197860768 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:197874348-197875230 Neighboring gene uncharacterized LOC124905354 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:197885227-197886159 Neighboring gene RNA, U6 small nuclear 860, pseudogene Neighboring gene uncharacterized LOC100133150 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197947311-197948234 Neighboring gene septin 14 pseudogene 3 Neighboring gene capicua transcriptional repressor pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • family with sequence similarity 157 member A (non-protein coding)
    • general transcription factor IIi pseudogene 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146164.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073135
      Related
      ENST00000634862.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      198153206..198222513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187539.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      13047..82354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      200882974..200954215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001145248.1: Suppressed sequence

      Description
      NM_001145248.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C9JC47.1 GenPept UniProtKB/Swiss-Prot:C9JC47

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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