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    Nenf neuron derived neurotrophic factor [ Mus musculus (house mouse) ]

    Gene ID: 66208, updated on 2-Nov-2024

    Summary

    Official Symbol
    Nenfprovided by MGI
    Official Full Name
    neuron derived neurotrophic factorprovided by MGI
    Primary source
    MGI:MGI:1913458
    See related
    Ensembl:ENSMUSG00000037499 AllianceGenome:MGI:1913458
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Spuf; SCIRP10; 1110060M21Rik
    Summary
    Enables growth factor activity. Involved in negative regulation of appetite. Acts upstream of or within positive regulation of MAPK cascade. Located in endoplasmic reticulum; extracellular space; and mitochondrion. Is expressed in brain; heart; lung; metanephros; and spinal cord. Orthologous to human NENF (neudesin neurotrophic factor). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in ovary adult (RPKM 144.0), adrenal adult (RPKM 120.8) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Nenf in Genome Data Viewer
    Location:
    1 H6; 1 96.28 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (191038984..191050328, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (191306787..191318131, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4405 Neighboring gene STARR-seq mESC enhancer starr_03429 Neighboring gene STARR-positive B cell enhancer ABC_E2027 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:193017813-193017996 Neighboring gene activating transcription factor 3 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193021775-193022076 Neighboring gene RIKEN cDNA D730003I15 gene Neighboring gene STARR-positive B cell enhancer ABC_E1578 Neighboring gene STARR-positive B cell enhancer ABC_E4407 Neighboring gene STARR-positive B cell enhancer ABC_E7786 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193099421-193099721 Neighboring gene STARR-positive B cell enhancer ABC_E3354 Neighboring gene STARR-positive B cell enhancer ABC_E11113 Neighboring gene STARR-positive B cell enhancer ABC_E7787 Neighboring gene proton activated chloride channel 1 Neighboring gene protein phosphatase 2, regulatory subunit B', alpha Neighboring gene RAB11B, member RAS oncogene family, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 
    • Targeted (2)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables growth factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    neudesin
    Names
    SCIRP10-related protein
    Spinal cord injury related protein 10
    secreted protein of unknown function

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025424.3NP_079700.1  neudesin precursor

      See identical proteins and their annotated locations for NP_079700.1

      Status: VALIDATED

      Source sequence(s)
      AC115896, AK002413
      Consensus CDS
      CCDS15618.1
      UniProtKB/Swiss-Prot
      Q5TM91, Q9CQ45
      Related
      ENSMUSP00000046311.10, ENSMUST00000046770.10
      Conserved Domains (1) summary
      pfam00173
      Location:45100
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      191038984..191050328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)