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    uncharacterized protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856343, updated on 2-Nov-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    SGD:S000001034
    Locus tag
    YHL042W
    See related
    AllianceGenome:SGD:S000001034; FungiDB:YHL042W; VEuPathDB:YHL042W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    Location:
    chromosome: VIII
    Exon count:
    1
    Sequence:
    Chromosome: VIII; NC_001140.6 (15667..16119)

    Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene DUP240 family protein Neighboring gene Ecm34p Neighboring gene uncharacterized protein Neighboring gene siderophore transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001140.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An integrative analysis of transcriptomic response of ethanol tolerant strains to ethanol in Saccharomyces cerevisiae. Kasavi C, et al. Mol Biosyst, 2016 Feb. PMID 26661334
    2. A system based network approach to ethanol tolerance in Saccharomyces cerevisiae. Kasavi C, et al. BMC Syst Biol, 2014 Aug 8. PMID 25103914, Free PMC Article
    3. Predicting subcellular localization of proteins using protein-protein interaction data. Garapati HS, et al. Genomics, 2020 May. PMID 31945465
    4. An evolutionary scenario for one of the largest yeast gene families. Despons L, et al. Trends Genet, 2006 Jan. PMID 16269202
    5. New insight into the role of the Cdc34 ubiquitin-conjugating enzyme in cell cycle regulation via Ace2 and Sic1. Cocklin R, et al. Genetics, 2011 Mar. PMID 21196523, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in fungal-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_011821.1
    • Endoplasmic reticulum protein; member of DUP380 subfamily of conserved, often subtelomerically-encoded proteins; may contribute to maintenance of ER and nuclear morphology; null mutants have distorted nuclear envelope shape, and discontinuous, misshapen perinuclear ER

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001140.6 Reference assembly

      Range
      15667..16119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179122.1 → NP_011821.1  TPA: uncharacterized protein YHL042W [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011821.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DKS8, P38729
      UniProtKB/TrEMBL
      C7GRT2
      Conserved Domains (1) summary
      pfam00674
      Location:30 → 122
      DUP; DUP family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38729.1

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