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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032901.2 RefSeqGene
- Range
-
60197..81452
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_625
mRNA and Protein(s)
-
NM_001031698.3 → NP_001026868.2 pre-mRNA-processing factor 40 homolog B isoform 1
See identical proteins and their annotated locations for NP_001026868.2
Status: REVIEWED
- Source sequence(s)
-
AC020612
- Consensus CDS
-
CCDS31796.2
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- UniProtKB/TrEMBL
-
F8VU11
- Related
- ENSP00000448073.2, ENST00000548825.7
- Conserved Domains (6) summary
-
- smart00441
Location:655 → 703
- FF; Contains two conserved F residues
- COG5104
Location:111 → 603
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:159 → 188
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:120 → 145
- WW; WW domain
- pfam01846
Location:300 → 349
- FF; FF domain
- cl21455
Location:422 → 480
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
NM_001363607.2 → NP_001350536.2 pre-mRNA-processing factor 40 homolog B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC020612
- Consensus CDS
-
CCDS86298.2
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- UniProtKB/TrEMBL
-
A0A8Z5ADK7
- Related
- ENSP00000369634.2, ENST00000380281.6
- Conserved Domains (2) summary
-
- smart00441
Location:655 → 703
- FF; Contains two conserved F residues
- COG5104
Location:111 → 603
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379030.1 → NP_001365959.1 pre-mRNA-processing factor 40 homolog B isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:645 → 693
- FF; Contains two conserved F residues
- COG5104
Location:111 → 593
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379031.1 → NP_001365960.1 pre-mRNA-processing factor 40 homolog B isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:628 → 676
- FF; Contains two conserved F residues
- COG5104
Location:84 → 576
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379032.1 → NP_001365961.1 pre-mRNA-processing factor 40 homolog B isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:628 → 676
- FF; Contains two conserved F residues
- COG5104
Location:84 → 576
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379033.1 → NP_001365962.1 pre-mRNA-processing factor 40 homolog B isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:618 → 666
- FF; Contains two conserved F residues
- COG5104
Location:117 → 566
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379034.1 → NP_001365963.1 pre-mRNA-processing factor 40 homolog B isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:618 → 666
- FF; Contains two conserved F residues
- COG5104
Location:117 → 566
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379035.1 → NP_001365964.1 pre-mRNA-processing factor 40 homolog B isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:591 → 639
- FF; Contains two conserved F residues
- COG5104
Location:90 → 539
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379036.1 → NP_001365965.1 pre-mRNA-processing factor 40 homolog B isoform 10
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:591 → 639
- FF; Contains two conserved F residues
- COG5104
Location:90 → 539
- PRP40; Splicing factor [RNA processing and modification]
-
NM_001379037.1 → NP_001365966.1 pre-mRNA-processing factor 40 homolog B isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (2) summary
-
- smart00441
Location:536 → 584
- FF; Contains two conserved F residues
- COG5104
Location:90 → 484
- PRP40; Splicing factor [RNA processing and modification]
-
NM_012272.3 → NP_036404.1 pre-mRNA-processing factor 40 homolog B isoform 2
See identical proteins and their annotated locations for NP_036404.1
Status: REVIEWED
- Source sequence(s)
-
AC020612
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Related
- ENSP00000261897.1, ENST00000261897.5
- Conserved Domains (6) summary
-
- smart00441
Location:620 → 668
- FF; Contains two conserved F residues
- COG5104
Location:83 → 568
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:131 → 160
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:92 → 117
- WW; WW domain
- pfam01846
Location:272 → 321
- FF; FF domain
- cl21455
Location:394 → 452
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
49622646..49644665
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047428678.1 → XP_047284634.1 pre-mRNA-processing factor 40 homolog B isoform X11
-
XM_017019135.3 → XP_016874624.1 pre-mRNA-processing factor 40 homolog B isoform X10
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
-
XM_011538139.4 → XP_011536441.1 pre-mRNA-processing factor 40 homolog B isoform X4
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (6) summary
-
- smart00441
Location:655 → 703
- FF; Contains two conserved F residues
- COG5104
Location:111 → 603
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:159 → 188
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:120 → 145
- WW; WW domain
- pfam01846
Location:300 → 349
- FF; FF domain
- cl21455
Location:422 → 480
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
XM_011538140.4 → XP_011536442.1 pre-mRNA-processing factor 40 homolog B isoform X5
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (6) summary
-
- smart00441
Location:655 → 703
- FF; Contains two conserved F residues
- COG5104
Location:111 → 603
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:159 → 188
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:120 → 145
- WW; WW domain
- pfam01846
Location:300 → 349
- FF; FF domain
- cl21455
Location:422 → 480
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
XM_011538143.4 → XP_011536445.1 pre-mRNA-processing factor 40 homolog B isoform X8
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (6) summary
-
- smart00441
Location:628 → 676
- FF; Contains two conserved F residues
- COG5104
Location:84 → 576
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:132 → 161
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:93 → 118
- WW; WW domain
- pfam01846
Location:273 → 322
- FF; FF domain
- cl21455
Location:395 → 453
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
XM_047428677.1 → XP_047284633.1 pre-mRNA-processing factor 40 homolog B isoform X9
-
XM_047428674.1 → XP_047284630.1 pre-mRNA-processing factor 40 homolog B isoform X3
-
XM_047428676.1 → XP_047284632.1 pre-mRNA-processing factor 40 homolog B isoform X7
-
XM_047428675.1 → XP_047284631.1 pre-mRNA-processing factor 40 homolog B isoform X6
-
XM_047428679.1 → XP_047284635.1 pre-mRNA-processing factor 40 homolog B isoform X13
-
XM_017019138.2 → XP_016874627.1 pre-mRNA-processing factor 40 homolog B isoform X12
-
XM_006719324.5 → XP_006719387.1 pre-mRNA-processing factor 40 homolog B isoform X1
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (6) summary
-
- smart00441
Location:717 → 765
- FF; Contains two conserved F residues
- COG5104
Location:173 → 665
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:221 → 250
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:182 → 207
- WW; WW domain
- pfam01846
Location:362 → 411
- FF; FF domain
- cl21455
Location:484 → 542
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
XM_006719325.5 → XP_006719388.1 pre-mRNA-processing factor 40 homolog B isoform X2
- UniProtKB/Swiss-Prot
- O75401, Q6NWY9, Q6PI09, Q6ZWB3, Q8NCZ1, Q9H5G4, Q9NT95
- Conserved Domains (6) summary
-
- smart00441
Location:717 → 765
- FF; Contains two conserved F residues
- COG5104
Location:173 → 665
- PRP40; Splicing factor [RNA processing and modification]
- cd00201
Location:221 → 250
- WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
- pfam00397
Location:182 → 207
- WW; WW domain
- pfam01846
Location:362 → 411
- FF; FF domain
- cl21455
Location:484 → 542
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
49585655..49607675
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054371695.1 → XP_054227670.1 pre-mRNA-processing factor 40 homolog B isoform X11
-
XM_054371694.1 → XP_054227669.1 pre-mRNA-processing factor 40 homolog B isoform X10
-
XM_054371688.1 → XP_054227663.1 pre-mRNA-processing factor 40 homolog B isoform X4
-
XM_054371689.1 → XP_054227664.1 pre-mRNA-processing factor 40 homolog B isoform X5
-
XM_054371692.1 → XP_054227667.1 pre-mRNA-processing factor 40 homolog B isoform X8
-
XM_054371693.1 → XP_054227668.1 pre-mRNA-processing factor 40 homolog B isoform X9
-
XM_054371687.1 → XP_054227662.1 pre-mRNA-processing factor 40 homolog B isoform X3
-
XM_054371691.1 → XP_054227666.1 pre-mRNA-processing factor 40 homolog B isoform X7
-
XM_054371690.1 → XP_054227665.1 pre-mRNA-processing factor 40 homolog B isoform X6
-
XM_054371697.1 → XP_054227672.1 pre-mRNA-processing factor 40 homolog B isoform X13
-
XM_054371696.1 → XP_054227671.1 pre-mRNA-processing factor 40 homolog B isoform X12
-
XM_054371685.1 → XP_054227660.1 pre-mRNA-processing factor 40 homolog B isoform X1
-
XM_054371686.1 → XP_054227661.1 pre-mRNA-processing factor 40 homolog B isoform X2
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NR_052006.1: Suppressed sequence
- Description
- NR_052006.1: This RefSeq was permanently suppressed because it is now thought that this transcript does encode a protein.