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    gdpP phosphodiesterase acting on cyclic dinucleotides [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 937816, updated on 12-Feb-2021

    Summary

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    Gene symbol
    gdpP
    Gene description
    phosphodiesterase acting on cyclic dinucleotides
    Locus tag
    BSU_40510
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU40510
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    Genomic context

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    Sequence:
    NC_000964.3 (4163643..4165622, complement)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative anion ABC transporter (permease) Neighboring gene putative glycosyl transferase Neighboring gene ribosomal protein L9 Neighboring gene putative integral inner membrane protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A σD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP in Bacillus subtilis. Luo Y, et al. Microbiology (Reading), 2012 Nov. PMID 22956758, Free PMC Article
    2. YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity. Rao F, et al. J Biol Chem, 2010 Jan 1. PMID 19901023, Free PMC Article
    3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
    5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. sigmaD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP (YybT).
      Title: A σD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP in Bacillus subtilis.
    2. The B. subtilis protein YybT, a member of the COG3387 family proteins, exhibits phosphodiesterase activity toward cyclic dinucleotides.
      Title: YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    phosphodiesterase acting on cyclic dinucleotides
    NP_391931.1
    • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 19901023, 19553197, 21257773, 21566650, 24465894, 24680501, 25616256, 26240071, 27150552, 28069645; Product type e: enzyme

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      4163643..4165622 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_391931.1 phosphodiesterase acting on cyclic dinucleotides [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_391931.1

      Status: PROVISIONAL

      Conserved Domains (1) summary
      COG3887
      Location:1 → 657
      GdpP; c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P37484.1

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    Research Materials