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    SNORA5C small nucleolar RNA, H/ACA box 5C [ Homo sapiens (human) ]

    Gene ID: 677796, updated on 17-Jun-2024

    Summary

    Official Symbol
    SNORA5Cprovided by HGNC
    Official Full Name
    small nucleolar RNA, H/ACA box 5Cprovided by HGNC
    Primary source
    HGNC:HGNC:32590
    See related
    Ensembl:ENSG00000201772 MIM:611335; AllianceGenome:HGNC:32590
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ACA5c
    Summary
    Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA5C, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]
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    Genomic context

    See SNORA5C in Genome Data Viewer
    Location:
    7p13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (45104906..45105042, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (45265707..45265843, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (45144505..45144641, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene NAC alpha domain containing Neighboring gene ReSE screen-validated silencer GRCh37_chr7:45143162-45143329 Neighboring gene transforming growth factor beta regulator 4 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:45151068-45151823 Neighboring gene small nucleolar RNA, H/ACA box 5A Neighboring gene small nucleolar RNA, H/ACA box 5B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:45163452-45164277 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:45173420-45173920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25970 Neighboring gene receptor activity modifying protein 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:45217100-45217600

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Other Names

    • HBI-80

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002991.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013416
      Related
      ENST00000364902.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      45104906..45105042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      45265707..45265843 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)