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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_050757.1 RefSeqGene
- Range
-
5020..33314
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001323625.2 → NP_001310554.1 lysophosphatidic acid phosphatase type 6 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and coding region, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC241644
-
NM_016361.5 → NP_057445.4 lysophosphatidic acid phosphatase type 6 isoform 1
See identical proteins and their annotated locations for NP_057445.4
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AB031478, AB209248, AC241644, AL520992, BC009965
- Consensus CDS
-
CCDS928.1
- UniProtKB/Swiss-Prot
- Q59G61, Q5T490, Q6IAQ3, Q7LG81, Q9NPH0, Q9UIG6, X5D289
- Related
- ENSP00000463574.1, ENST00000583509.7
- Conserved Domains (1) summary
-
- cd07061
Location:49 → 379
- HP_HAP_like; Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction
RNA
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NR_136633.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate internal exon and includes an alternate segment in the 3' end, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC241644
-
NR_136634.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in the 5'-terminal exon, includes two alternate internal exons, and includes an alternate segment in the 3' end, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC241644
-
NR_136635.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC241644
-
NR_136636.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) uses an alternate splice site in the 5'-terminal exon, includes an alternate internal exon, and includes an alternate segment in the 3' end, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC241644
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
147629658..147670524 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011509601.4 → XP_011507903.1 lysophosphatidic acid phosphatase type 6 isoform X1
- Conserved Domains (1) summary
-
- cd07061
Location:49 → 379
- HP_HAP_like; Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
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147137207..147181884
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054336916.1 → XP_054192891.1 lysophosphatidic acid phosphatase type 6 isoform X1