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    TTTY17C testis expressed transcript, Y-linked 17C [ Homo sapiens (human) ]

    Gene ID: 474152, updated on 17-Sep-2024

    Summary

    Official Symbol
    TTTY17Cprovided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 17Cprovided by HGNC
    Primary source
    HGNC:HGNC:31890
    See related
    AllianceGenome:HGNC:31890
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NCRNA00142
    Summary
    There are three copies of this gene on chromosome Y. This record represents the most telomeric copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]
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    Genomic context

    See TTTY17C in Genome Data Viewer
    Location:
    Yq11.23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (25183643..25184773, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (25996052..25997183, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (27329790..27330920, complement)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 736 pseudogene 4, Y-linked Neighboring gene tripartite motif containing 60 pseudogene 12, Y-linked Neighboring gene RNA binding motif protein Y-linked family 2 member Y, pseudogene Neighboring gene ribosomal protein L41 pseudogene 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • testis-specific transcript, Y-linked 17, telomeric
    • testis-specific transcript, Y-linked 17C (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002179.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006386

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      25183643..25184773 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      25996052..25997183 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)