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    LINC01020 long intergenic non-protein coding RNA 1020 [ Homo sapiens (human) ]

    Gene ID: 340094, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01020provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1020provided by HGNC
    Primary source
    HGNC:HGNC:27968
    See related
    Ensembl:ENSG00000215231 AllianceGenome:HGNC:27968
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward kidney (RPKM 2.1) See more
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    Genomic context

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    See LINC01020 in Genome Data Viewer
    Location:
    5p15.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (5034359..5070004)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (4961981..4997621)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (5034472..5070117)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986400 Neighboring gene uncharacterized LOC105374629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:4866628-4867128 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:4867129-4867629 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22316 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:4892907-4893408 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_85978 Neighboring gene uncharacterized LOC105374630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22317 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22321 Neighboring gene long intergenic non-protein coding RNA 2121 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22322 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5139649-5140215 Neighboring gene ADAMTS16 divergent transcript Neighboring gene RN7SK pseudogene 73

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • CTD-2247C11.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026994.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010451, BC042977, BC113532
      Related
      ENST00000508201.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      5034359..5070004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      4961981..4997621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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