U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ANKRD36BP2 ankyrin repeat domain 36B pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 645784, updated on 17-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ANKRD36BP2provided by HGNC
    Official Full Name
    ankyrin repeat domain 36B pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:33607
    See related
    Ensembl:ENSG00000291127 AllianceGenome:HGNC:33607
    Gene type
    pseudo
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 7.3), duodenum (RPKM 5.8) and 15 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ANKRD36BP2 in Genome Data Viewer
    Location:
    2p11.2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (88765902..88806596)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (88774925..88815601)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89065419..89106110)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724805 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:88958311-88959220 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16172 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11733 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16174 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:88998185-88998359 Neighboring gene ribose 5-phosphate isomerase A Neighboring gene uncharacterized LOC105374853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16175 Neighboring gene Sharpr-MPRA regulatory region 15514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:89064099-89064600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11734 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11735 Neighboring gene Sharpr-MPRA regulatory region 6437 Neighboring gene microRNA 4436a Neighboring gene MALL pseudogene 2 Neighboring gene uncharacterized LOC105374854

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Markers

    Clone Names

    • FLJ40330, DKFZp434J1630, DKFZp686E1246, DKFZp686O04183

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015424.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC031698
      Related
      ENST00000393515.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      88765902..88806596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      88774925..88815601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials