U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LRRC37A11P leucine rich repeat containing 37 member A11, pseudogene [ Homo sapiens (human) ]

    Gene ID: 342666, updated on 17-Sep-2024

    Summary

    Official Symbol
    LRRC37A11Pprovided by HGNC
    Official Full Name
    leucine rich repeat containing 37 member A11, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:43815
    See related
    Ensembl:ENSG00000290925 AllianceGenome:HGNC:43815
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LRRC37F
    Expression
    Biased expression in testis (RPKM 1.8), skin (RPKM 0.7) and 1 other tissue See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LRRC37A11P in Genome Data Viewer
    Location:
    17q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (39029906..39053205)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (39893750..39917059)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37186159..37209458)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene F-box protein 47 Neighboring gene uncharacterized LOC105371767 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:37168027-37168564 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:37168565-37169102 Neighboring gene long intergenic non-protein coding RNA 2079 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:37202329-37203528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37228227-37229015 Neighboring gene RDM1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12086 Neighboring gene plexin domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37239721-37240221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37243560-37244060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12088 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:37255200-37255801 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:37265163-37265351 Neighboring gene uncharacterized LOC124903995

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • leucine rich repeat containing 37, member A3 pseudogene

    Clone Names

    • FLJ43826, MGC133195

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033753.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091178
      Related
      ENST00000425901.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      39029906..39053205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      39893750..39917059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_198502.1: Suppressed sequence

      Description
      NM_198502.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.