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    SDHAP1 SDHA pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 255812, updated on 10-Oct-2023

    Summary

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    Official Symbol
    SDHAP1provided by HGNC
    Official Full Name
    SDHA pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:32455
    See related
    Ensembl:ENSG00000290763 AllianceGenome:HGNC:32455
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SDHAL1; SDHALP1
    Annotation information
    Note: After Build36.1, HUGO Gene Nomenclature Committee (HGNC) and NCBI noted that the annotation of SDHAL1 and SDHAL2 was incorrect. SDHAL1 is the form telomeric to SDHAL2. At that time the name of GeneID 255812 was changed to SDHAL1. [11 Apr 2007]
    Expression
    Ubiquitous expression in endometrium (RPKM 12.4), testis (RPKM 11.3) and 25 other tissues See more
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    Genomic context

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    See SDHAP1 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (195959921..195990279, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (198679298..198709381, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (195686792..195717150, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195654722-195655690 Neighboring gene RNA, U2 small nuclear 11, pseudogene Neighboring gene mucin-5AC-like Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195666797-195667467 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195667468-195668137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195682291-195682942 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21064 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195694102-195694602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195694603-195695103 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:195698692-195698924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15050 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene uncharacterized LOC124909478

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LncRNA SDHAP1 confers paclitaxel resistance of ovarian cancer by regulating EIF4G2 expression via miR-4465. Zhao H, et al. J Biochem, 2020 Aug 1. PMID 32211849
    2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LncRNA SDHAP1 confers paclitaxel resistance of ovarian cancer by regulating EIF4G2 expression via miR-4465.
      Title: LncRNA SDHAP1 confers paclitaxel resistance of ovarian cancer by regulating EIF4G2 expression via miR-4465.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • succinate dehydrogenase complex flavoprotein subunit A pseudogene 1
    • succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1
    • succinate dehydrogenase complex, subunit A, flavoprotein-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003264.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BC071730
      Related
      ENST00000427841.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      195959921..195990279 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      198679298..198709381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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