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    TEX41 testis expressed 41 [ Homo sapiens (human) ]

    Gene ID: 401014, updated on 17-Sep-2024

    Summary

    Official Symbol
    TEX41provided by HGNC
    Official Full Name
    testis expressed 41provided by HGNC
    Primary source
    HGNC:HGNC:48667
    See related
    Ensembl:ENSG00000226674 AllianceGenome:HGNC:48667
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00953; DKFZp686O1327
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See TEX41 in Genome Data Viewer
    Location:
    2q22.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (144667967..145076729)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (145115976..145524709)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (145425534..145834296)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene zinc finger E-box binding homeobox 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:145324978-145325484 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:145325485-145325991 Neighboring gene long intergenic non-protein coding RNA 1412 Neighboring gene long intergenic non-protein coding RNA 2993 Neighboring gene VISTA enhancer hs1802 Neighboring gene ZEB2 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:145366588-145367089 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:145469568-145470218 Neighboring gene uncharacterized LOC105373663 Neighboring gene SGCE pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 1966 Neighboring gene uncharacterized LOC100505498 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:145764403-145765602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16607 Neighboring gene ribosomal protein L6 pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:146248222-146248369 Neighboring gene uncharacterized LOC105373664

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 953
    • testis expressed 41 (non-protein coding)

    Clone Names

    • AC074093.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033870.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC074093, BC043549, BQ438527, BX648102
      Related
      ENST00000445791.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      144667967..145076729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      145115976..145524709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)