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    LINC03103 long intergenic non-protein coding RNA 3103 [ Homo sapiens (human) ]

    Gene ID: 100507527, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC03103provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3103provided by HGNC
    Primary source
    HGNC:HGNC:48330
    See related
    Ensembl:ENSG00000267465 AllianceGenome:HGNC:48330
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    THEG5
    Expression
    Restricted expression toward testis (RPKM 3.1) See more
    Orthologs
    all
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    Genomic context

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    See LINC03103 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (31588174..31593785)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (34106779..34112390)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (32079080..32084691)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene TSHZ3 antisense RNA 1 Neighboring gene uncharacterized LOC124904794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31879539-31880040 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:31909131-31910077 Neighboring gene Sharpr-MPRA regulatory region 8466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31939361-31939861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31990532-31991116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31991117-31991701 Neighboring gene long intergenic non-protein coding RNA 2841 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:32043944-32045143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:32065114-32065673 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:32129182-32129347 Neighboring gene RNA, 5S ribosomal pseudogene 471 Neighboring gene uncharacterized LOC105372361

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Homology

    Other Names

    • testis highly expressed protein 5

    Clone Names

    • AC011525.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_172934.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000592788.6

    2. NR_172935.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000664056.1

    3. NR_172936.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000655260.1

    4. NR_172937.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000663546.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      31588174..31593785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      34106779..34112390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001205273.3: Suppressed sequence

      Description
      NM_001205273.3: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    2. NM_001278575.3: Suppressed sequence

      Description
      NM_001278575.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_001278576.3: Suppressed sequence

      Description
      NM_001278576.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    4. NM_001278577.3: Suppressed sequence

      Description
      NM_001278577.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    5. NM_001278578.3: Suppressed sequence

      Description
      NM_001278578.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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