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    Zfp800 zinc finger protein 800 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500057, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Zfp800provided by RGD
    Official Full Name
    zinc finger protein 800provided by RGD
    Primary source
    RGD:1560157
    See related
    EnsemblRapid:ENSRNOG00000007662 AllianceGenome:RGD:1560157
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560157
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within acinar cell differentiation and endocrine pancreas development. Predicted to be located in nucleus. Orthologous to human ZNF800 (zinc finger protein 800). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 99.0), Thymus (RPKM 97.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp800 in Genome Data Viewer
    Location:
    4q22
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (57763789..57977318, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (56798326..56849766, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (55502644..55527039, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene glutamate metabotropic receptor 8 Neighboring gene U2 spliceosomal RNA Neighboring gene microRNA 592 Neighboring gene uncharacterized LOC120102248 Neighboring gene H3 histone, family 3C like 2 Neighboring gene U1 spliceosomal RNA Neighboring gene fascin actin-bundling protein 3 Neighboring gene GRIP and coiled-coil domain containing 1 Neighboring gene ADP-ribosylation factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within acinar cell differentiation ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within endocrine pancreas development ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109225.1 → NP_001102695.1  zinc finger protein 800

      See identical proteins and their annotated locations for NP_001102695.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473959
      UniProtKB/TrEMBL
      A0A0G2JY61, A6IEA4, D3ZPQ4
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      57763789..57977318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286482.1 → XP_063142552.1  zinc finger protein 800 isoform X1

    2. XM_039108103.2 → XP_038964031.1  zinc finger protein 800 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JY61
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    3. XM_039108106.2 → XP_038964034.1  zinc finger protein 800 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JY61
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    4. XM_039108105.2 → XP_038964033.1  zinc finger protein 800 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JY61
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    5. XM_039108104.2 → XP_038964032.1  zinc finger protein 800 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JY61
      Related
      ENSRNOP00000070530.3, ENSRNOT00000087407.3
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    6. XM_039108107.2 → XP_038964035.1  zinc finger protein 800 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JY61
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    7. XM_063286486.1 → XP_063142556.1  zinc finger protein 800 isoform X2

      UniProtKB/TrEMBL
      A6IEA4, D3ZPQ4

    8. XM_039108108.2 → XP_038964036.1  zinc finger protein 800 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JY61, A6IEA4, D3ZPQ4
      Conserved Domains (5) summary
      sd00018
      Location:618 → 640
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:488 → 508
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:618 → 640
      zf-C2H2; Zinc finger, C2H2 type
      pfam16622
      Location:355 → 383
      zf-C2H2_11; zinc-finger C2H2-type
      pfam16624
      Location:391 → 485
      zf-C2H2_assoc2; Unstructured region upstream of a zinc-finger

    9. XM_063286484.1 → XP_063142554.1  zinc finger protein 800 isoform X2

      UniProtKB/TrEMBL
      A6IEA4, D3ZPQ4

    10. XM_063286483.1 → XP_063142553.1  zinc finger protein 800 isoform X2

      UniProtKB/TrEMBL
      A6IEA4, D3ZPQ4

    11. XM_063286485.1 → XP_063142555.1  zinc finger protein 800 isoform X2

      UniProtKB/TrEMBL
      A6IEA4, D3ZPQ4
    Nucleotide Protein Strain
    Heading Accession and Version

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