LSH1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: LSH1
Official Full Name: LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Primary source: TAIR:AT5G28490
Locus tag: AT5G28490
See related: Araport:AT5G28490
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F24J2.30; F24J2_30; LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; OBO2; ORGAN BOUNDARY 2
Summary: Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.
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Genomic context

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See LSH1 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 1

Sequence:: Chromosome: 5; NC_003076.8 (10454388..10455681, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes.
Title: Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_122732.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in mRNA transcription	ISS Inferred from Sequence or Structural Similarity more info
involved_in post-embryonic plant morphogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within response to blue light	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within response to far red light	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within response to light stimulus	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to red light	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within unidimensional cell growth	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

NP_198201.1

LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT3G04510.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

10454388..10455681 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_122732.3 → NP_198201.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_198201.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q6NNI3

UniProtKB/TrEMBL

A0A178UNT3, A0A5S9Y7Z8, A0A7G2FDP9

Conserved Domains (1) summary

pfam04852
Location:13 → 138

DUF640; Protein of unknown function (DUF640)