XTH24 xyloglucan endotransglucosylase/hydrolase 24 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: XTH24
Gene description: xyloglucan endotransglucosylase/hydrolase 24
Primary source: Araport:AT4G30270
Locus tag: AT4G30270
See related: TAIR:AT4G30270
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F9N11.120; F9N11_120; MERI-5; MERI5B; MERISTEM 5; meristem-5; SEN4; SENESCENCE 4; xyloglucan endotransglucosylase/hydrolase 24
Summary: encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.
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Genomic context

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See XTH24 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 3

Sequence:: Chromosome: 4; NC_003075.7 (14819192..14820595, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LONGIFOLIA related genes play an important role in polar cell elongation by changing turgor pressure and controlling the activation of XTH17 and XTH24
Title: Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_119173.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds	IEA Inferred from Electronic Annotation more info
enables polysaccharide binding	ISS Inferred from Sequence or Structural Similarity more info
enables xyloglucan:xyloglucosyl transferase activity	IDA Inferred from Direct Assay more info	PubMed
enables xyloglucan:xyloglucosyl transferase activity	TAS Traceable Author Statement more info

Process	Evidence Code	Pubs
involved_in cell wall biogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within gibberellic acid mediated signaling pathway	TAS Traceable Author Statement more info
acts_upstream_of_or_within plant-type cell wall loosening	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within plant-type cell wall organization or biogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to brassinosteroid	IGI Inferred from Genetic Interaction more info
acts_upstream_of_or_within response to gibberellin	IGI Inferred from Genetic Interaction more info
involved_in xyloglucan metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	HDA more info	PubMed
located_in cytoplasm	HDA more info	PubMed
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in plant-type cell wall	HDA more info	PubMed
located_in plasma membrane	HDA more info	PubMed
located_in secretory vesicle	HDA more info	PubMed

General protein information

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Preferred Names: xyloglucan endotransglucosylase/hydrolase 24

NP_194756.1

xyloglucan endotransglucosylase/hydrolase 24 (XTH24); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: aging, response to gibberellin stimulus, gibberellic acid mediated signaling pathway, response to brassinosteroid stimulus, plant-type cell wall loosening; LOCATED IN: cell wall, plasma membrane, cytoplasm, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2202 Blast hits to 2180 proteins in 308 species: Archae - 0; Bacteria - 283; Metazoa - 0; Fungi - 433; Plants - 1389; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

14819192..14820595 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119173.4 → NP_194756.1 xyloglucan endotransglucosylase/hydrolase 24 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194756.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O64956, P24806, Q39148, Q39149, Q41904, Q8LDQ0

UniProtKB/TrEMBL

A0A178UVM1, A0A384LKB4, Q0WLB0

Conserved Domains (1) summary

cd02176
Location:20 → 265

GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16