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    • Showing Current items.

    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828799, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT4G26920
    Locus tag
    AT4G26920
    See related
    TAIR:AT4G26920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M23.260; F10M23_260
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (13525031..13527172)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 16 Neighboring gene HIS HF Neighboring gene Dihydrolipoamide succinyltransferase Neighboring gene myb domain protein 97 Neighboring gene Galactosyltransferase family protein Neighboring gene senescence regulator (Protein of unknown function, DUF584)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and molecular properties of SUMO-binding proteins in Arabidopsis. Park HC, et al. Mol Cells, 2011 Aug. PMID 21607647, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    START (StAR-related lipid-transfer) lipid-binding domain-containing protein
    NP_194422.1
    • START (StAR-related lipid-transfer) lipid-binding domain; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT5G07260.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13525031..13527172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118826.1 → NP_194422.1  START (StAR-related lipid-transfer) lipid-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194422.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9M0J8, Q9SZ32
      Conserved Domains (1) summary
      cl14643
      Location:69 → 228
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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