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    NDF5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841984, updated on 22-Aug-2024

    Summary

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    Official Symbol
    NDF5
    Primary source
    TAIR:AT1G55370
    Locus tag
    AT1G55370
    See related
    Araport:AT1G55370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NDH-dependent cyclic electron flow 5; T18I3.2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (20673768..20676449)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1639) Neighboring gene calpain-type cysteine protease family Neighboring gene tRNA-splicing ligase (DUF239) Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of an assembly factor-based subunit contributed to a novel NDH-PSI supercomplex formation in chloroplasts. Kato Y, et al. Nat Commun, 2021 Jun 17. PMID 34140516, Free PMC Article
    2. A novel nuclear-encoded protein, NDH-dependent cyclic electron flow 5, is essential for the accumulation of chloroplast NAD(P)H dehydrogenase complexes. Ishida S, et al. Plant Cell Physiol, 2009 Feb. PMID 19122188
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Evolution of an assembly factor-based subunit contributed to a novel NDH-PSI supercomplex formation in chloroplasts.
      Title: Evolution of an assembly factor-based subunit contributed to a novel NDH-PSI supercomplex formation in chloroplasts.
    2. NDF5 is involved in the regulation of NAD(P)H dehydrogenase activity.
      Title: A novel nuclear-encoded protein, NDH-dependent cyclic electron flow 5, is essential for the accumulation of chloroplast NAD(P)H dehydrogenase complexes.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_104413.4
    NM_179479.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photosynthetic electron transport in photosystem I IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NDH-dependent cyclic electron flow 5
    NP_564687.1
    • NDH-dependent cyclic electron flow 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: positive regulation of gene expression, photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 1 (TAIR:AT1G64770.1); Has 166 Blast hits to 165 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_849810.1
    • NDH-dependent cyclic electron flow 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 1 (TAIR:AT1G64770.2); Has 58 Blast hits to 57 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20673768..20676449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179479.3 → NP_849810.1  NDH-dependent cyclic electron flow 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849810.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E1C1
      Conserved Domains (1) summary
      cl14648
      Location:149 → 296
      Aldose_epim; aldose 1-epimerase superfamily

    2. NM_104413.4 → NP_564687.1  NDH-dependent cyclic electron flow 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564687.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFW7, Q0WU84, Q8LBH1, Q9C503
      UniProtKB/TrEMBL
      A0A178W3N4, A0A7G2E1C1
      Conserved Domains (1) summary
      cl14648
      Location:149 → 349
      Aldose_epim; aldose 1-epimerase superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C503.1

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