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    ELP extensin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837761, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ELP
    Official Full Name
    extensin-like protein
    Primary source
    TAIR:AT1G12090
    Locus tag
    AT1G12090
    See related
    Araport:AT1G12090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    extensin-like protein; F12F1.3; F12F1_3
    Summary
    extensin-like protein (ELP)
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    Genomic context

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    See ELP in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (4089664..4090857, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene Vacuolar calcium-binding protein-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene nitrate transporter 1.1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101081.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    extensin-like protein
    NP_172673.1
    • extensin-like protein (ELP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G62510.1); Has 793 Blast hits to 787 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 787; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4089664..4090857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101081.3 → NP_172673.1  extensin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172673.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1A4, O65369
      Conserved Domains (1) summary
      cd01958
      Location:57 → 137
      HPS_like; Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members ...
    Nucleotide Protein
    Heading Accession and Version

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