RPL23B ribosomal 60S subunit protein L23B [Saccharomyces cerevisiae S288C] - Gene

Summary

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Gene symbol: RPL23B
Gene description: ribosomal 60S subunit protein L23B
Primary source: FungiDB:YER117W
Locus tag: YER117W
See related: SGD:S000000919; AllianceGenome:SGD:S000000919; VEuPathDB:YER117W
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Saccharomyces cerevisiae S288C (strain: S288C)
Lineage: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary: Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosol and nucleus. Part of cytosolic large ribosomal subunit. Orthologous to human RPL23 (ribosomal protein L23). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See RPL23B in Genome Data Viewer

Location:: chromosome: V

Exon count:: 2

Sequence:: Chromosome: V; NC_001137.3 (396769..397653)

Chromosome V - NC_001137.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_001137.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The ribosomal large subunit protein L23a, encoded by the Rpl23a and Rpl23b genes, is modified by the SET domain methyltransferase Rkm1.
Title: A novel SET domain methyltransferase modifies ribosomal protein Rpl23ab in yeast.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by SGD

Function	Evidence Code	Pubs
enables large ribosomal subunit rRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IC Inferred by Curator more info	PubMed
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cytoplasmic translation	IC Inferred by Curator more info	PubMed
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IDA Inferred from Direct Assay more info	PubMed
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of cytosolic large ribosomal subunit	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ribosomal 60S subunit protein L23B

NP_011042.3

Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_001137.3 Reference assembly

Range

396769..397653

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001179007.3 → NP_011042.3 TPA: ribosomal 60S subunit protein L23B [Saccharomyces cerevisiae S288C]

See identical proteins and their annotated locations for NP_011042.3

Status: REVIEWED

UniProtKB/Swiss-Prot

D3DM23, P04451, P0CX41, P0CX42

UniProtKB/TrEMBL

A6ZKL6, B3LNL8, C8Z3V8, G2W8S6, N1P744

Conserved Domains (1) summary

PTZ00054
Location:5 → 137

PTZ00054; 60S ribosomal protein L23; Provisional

Nucleotide		Protein
Heading	Accession and Version	Protein

Protein Accession	Links
Protein Accession	GenPept Link	UniProtKB Link
3JCT_V.1
4V88_BV.1
4V88_DV.1
4V8T_V.1
5APN_V.1
5APO_V.1
5FL8_V.1
5H4P_V.1
5JCS_V.1
5T62_i.1
5T6R_i.1
6ELZ_V.1
6EM1_V.1
6EM4_V.1
6EM5_V.1
6FT6_V.1
6M62_V.1
6N8J_V.1
6N8K_V.1
6N8L_V.1
6N8M_i.1
6N8N_i.1
6N8O_i.1
7AZY_c.1
7BT6_V.1
7BTB_V.1
7OF1_V.1
7OH3_V.1
7OHP_V.1
7OHQ_V.1
7OHR_V.1
7OHS_V.1
7OHT_V.1
7OHU_V.1
7OHV_V.1
7OHW_V.1
7OHY_V.1
P0CX41.1
P0CX42.1