U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CRACDL CRACD like [ Homo sapiens (human) ]

    Gene ID: 343990, updated on 17-Sep-2024

    Summary

    Official Symbol
    CRACDLprovided by HGNC
    Official Full Name
    CRACD likeprovided by HGNC
    Primary source
    HGNC:HGNC:33454
    See related
    Ensembl:ENSG00000196872 AllianceGenome:HGNC:33454
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C2orf55; KIAA1211L
    Expression
    Broad expression in brain (RPKM 4.1), esophagus (RPKM 1.2) and 18 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CRACDL in Genome Data Viewer
    Location:
    2q11.2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (98793846..98936225, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (99252281..99394756, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (99410309..99552688, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99386702-99387202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99387203-99387703 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99389840-99390340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99390341-99390841 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:99391147-99392024 Neighboring gene long intergenic non-protein coding RNA 2611 Neighboring gene NANOG hESC enhancer GRCh37_chr2:99395023-99395587 Neighboring gene RNA, U4 small nuclear 84, pseudogene Neighboring gene Sharpr-MPRA regulatory region 14605 Neighboring gene RNA, U7 small nuclear 46 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99485973-99486580 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16271 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99526123-99526622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99529037-99529620 Neighboring gene Sharpr-MPRA regulatory region 6151 Neighboring gene MPRA-validated peak3796 silencer Neighboring gene testis specific 10 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:99656987-99658186 Neighboring gene NANOG hESC enhancer GRCh37_chr2:99698262-99699020 Neighboring gene SMC3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11805 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11806 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:99758101-99758907 Neighboring gene chromosome 2 open reading frame 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    CRACD-like protein
    Names
    KIAA1211 like
    uncharacterized protein C2orf55

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207362.3NP_997245.2  CRACD-like protein

      See identical proteins and their annotated locations for NP_997245.2

      Status: VALIDATED

      Source sequence(s)
      AC084377, BC068277, BM922097, CF593294
      Consensus CDS
      CCDS42720.1
      UniProtKB/Swiss-Prot
      Q6NV74
      Related
      ENSP00000380996.2, ENST00000397899.7
      Conserved Domains (1) summary
      pfam15262
      Location:145239
      DUF4592; Domain of unknown function (DUF4592)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      98793846..98936225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005263926.4XP_005263983.1  CRACD-like protein isoform X4

      See identical proteins and their annotated locations for XP_005263983.1

      Conserved Domains (1) summary
      pfam15262
      Location:145239
      DUF4592; Domain of unknown function (DUF4592)
    2. XM_017003972.2XP_016859461.1  CRACD-like protein isoform X3

      Conserved Domains (2) summary
      PRK07003
      Location:538840
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam15262
      Location:159253
      DUF4592; Domain of unknown function (DUF4592)
    3. XM_011511094.2XP_011509396.1  CRACD-like protein isoform X4

      See identical proteins and their annotated locations for XP_011509396.1

      Conserved Domains (1) summary
      pfam15262
      Location:145239
      DUF4592; Domain of unknown function (DUF4592)
    4. XM_011511093.2XP_011509395.1  CRACD-like protein isoform X3

      Conserved Domains (2) summary
      PRK07003
      Location:538840
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam15262
      Location:159253
      DUF4592; Domain of unknown function (DUF4592)
    5. XM_017003971.2XP_016859460.1  CRACD-like protein isoform X3

      Conserved Domains (2) summary
      PRK07003
      Location:538840
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam15262
      Location:159253
      DUF4592; Domain of unknown function (DUF4592)
    6. XM_011511095.2XP_011509397.1  CRACD-like protein isoform X4

      See identical proteins and their annotated locations for XP_011509397.1

      Conserved Domains (1) summary
      pfam15262
      Location:145239
      DUF4592; Domain of unknown function (DUF4592)
    7. XM_005263924.4XP_005263981.1  CRACD-like protein isoform X2

      Conserved Domains (1) summary
      pfam15262
      Location:173267
      DUF4592; Domain of unknown function (DUF4592)
    8. XM_005263923.4XP_005263980.1  CRACD-like protein isoform X1

      Conserved Domains (1) summary
      pfam15262
      Location:173267
      DUF4592; Domain of unknown function (DUF4592)
    9. XM_011511096.1XP_011509398.1  CRACD-like protein isoform X5

      Conserved Domains (1) summary
      pfam15262
      Location:12106
      DUF4592; Domain of unknown function (DUF4592)
    10. XM_047444123.1XP_047300079.1  CRACD-like protein isoform X6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      99252281..99394756 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054341737.1XP_054197712.1  CRACD-like protein isoform X4

    2. XM_054341733.1XP_054197708.1  CRACD-like protein isoform X3

    3. XM_054341736.1XP_054197711.1  CRACD-like protein isoform X4

    4. XM_054341734.1XP_054197709.1  CRACD-like protein isoform X3

    5. XM_054341735.1XP_054197710.1  CRACD-like protein isoform X3

    6. XM_054341738.1XP_054197713.1  CRACD-like protein isoform X4

    7. XM_054341732.1XP_054197707.1  CRACD-like protein isoform X2

    8. XM_054341731.1XP_054197706.1  CRACD-like protein isoform X1

    9. XM_054341739.1XP_054197714.1  CRACD-like protein isoform X5

    10. XM_054341740.1XP_054197715.1  CRACD-like protein isoform X6