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    RTRAF RNA transcription, translation and transport factor [ Canis lupus familiaris (dog) ]

    Gene ID: 610819, updated on 5-Mar-2024

    Summary

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    Gene symbol
    RTRAF
    Gene description
    RNA transcription, translation and transport factor
    See related
    Ensembl:ENSCAFG00845003592
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    C8H14orf166
    Orthologs
    human mouse all
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    Genomic context

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    See RTRAF in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (28402398..28417391)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (27977089..27995838)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (28479155..28494152)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (28071637..28086629)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (28132425..28147419)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 6 Neighboring gene uncharacterized LOC111097034 Neighboring gene G protein subunit gamma 2 Neighboring gene nidogen 2 Neighboring gene L-lactate dehydrogenase A chain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. hCLE/C14orf166, a cellular protein required for viral replication, is incorporated into influenza virus particles. Rodriguez-Frandsen A, et al. Sci Rep, 2016 Feb 11. PMID 26864902, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. C14orf166, a cellular protein required for viral replication, is incorporated into influenza virus particles.
      Title: hCLE/C14orf166, a cellular protein required for viral replication, is incorporated into influenza virus particles.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-splicing ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA transcription, translation and transport factor protein

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      28402398..28417391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673638.1 → XP_038529566.1  RNA transcription, translation and transport factor protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0Q1F7, A0A8I3MKM6
      Related
      ENSCAFP00845005076.1, ENSCAFT00845006392.1
      Conserved Domains (1) summary
      pfam10036
      Location:8 → 243
      RLL; Putative carnitine deficiency-associated protein

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      28071637..28086629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038483266.1 → XP_038339194.1  RNA transcription, translation and transport factor protein isoform X1

      Conserved Domains (1) summary
      pfam10036
      Location:8 → 243
      RLL; Putative carnitine deficiency-associated protein

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      28132425..28147419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608836.1 → XP_038464764.1  RNA transcription, translation and transport factor protein isoform X1

      Conserved Domains (1) summary
      pfam10036
      Location:8 → 243
      RLL; Putative carnitine deficiency-associated protein

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      28479155..28494152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544714.1 → XP_038400642.1  RNA transcription, translation and transport factor protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0Q1F7, A0A8I3MKM6
      Conserved Domains (1) summary
      pfam10036
      Location:8 → 243
      RLL; Putative carnitine deficiency-associated protein

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      27977089..27995838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022422005.2 → XP_022277713.1  RNA transcription, translation and transport factor protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0KQ26
      Conserved Domains (1) summary
      pfam10036
      Location:5 → 195
      RLL; Putative carnitine deficiency-associated protein

    2. XM_848373.6 → XP_853466.2  RNA transcription, translation and transport factor protein isoform X1

      See identical proteins and their annotated locations for XP_853466.2

      UniProtKB/TrEMBL
      A0A8C0Q1F7, A0A8I3MKM6
      Conserved Domains (1) summary
      pfam10036
      Location:8 → 243
      RLL; Putative carnitine deficiency-associated protein
    Nucleotide Protein
    Heading Accession and Version

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