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    LOC101928658 uncharacterized LOC101928658 [ Homo sapiens (human) ]

    Gene ID: 101928658, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101928658
    Gene description
    uncharacterized LOC101928658
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in spleen (RPKM 1.5), kidney (RPKM 0.5) and 4 other tissues See more
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    Genomic context

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    See LOC101928658 in Genome Data Viewer
    Location:
    4q12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (52927312..52951022)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (56414193..56437903)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900700 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15428 Neighboring gene Sharpr-MPRA regulatory region 13979 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:53733886-53734386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:53734387-53734887 Neighboring gene NANOG hESC enhancer GRCh37_chr4:53739270-53739771 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:53739925-53740884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:53743608-53744108 Neighboring gene RAS like family 11 member B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21558 Neighboring gene sec1 family domain containing 2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:53816447-53817384 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21559 Neighboring gene uncharacterized LOC124900701 Neighboring gene VISTA enhancer hs1668 Neighboring gene VISTA enhancer hs1460 Neighboring gene NANOG hESC enhancer GRCh37_chr4:54102933-54103444 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:54103445-54103956 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:54122352-54122863 Neighboring gene RNA, U6 small nuclear 310, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      52927312..52951022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_245255.4 RNA Sequence

    2. XR_001741692.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      56414193..56437903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007074619.1 RNA Sequence

    2. XR_007074620.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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