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    eps8l3.S EPS8-like 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 495088, updated on 11-Apr-2024

    Summary

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    Official Symbol
    eps8l3.S
    Official Full Name
    EPS8-like 3 S homeolog
    Primary source
    Xenbase:XB-GENE-982668
    Locus tag
    XELAEV_18014919mg
    See related
    EnsemblRapid:ENSXLAG00005001986
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    eps8l3; lapl03
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    Genomic context

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    See eps8l3.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (61155114..61229457, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (57109605..57184579, complement)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene adenosine monophosphate deaminase 2 S homeolog Neighboring gene glutathione S-transferase Mu 4-like Neighboring gene uncharacterized LOC121400546 Neighboring gene glutathione S-transferase mu 1 S homeolog Neighboring gene piggyBac transposable element-derived protein 4-like Neighboring gene uncharacterized LOC121400346

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
    2. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within Rho protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within positive regulation of ruffle assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of Rho protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ruffle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    EPS8-like 3 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094788.1 → NP_001088257.1  EPS8-like 3 S homeolog

      See identical proteins and their annotated locations for NP_001088257.1

      Status: PROVISIONAL

      Source sequence(s)
      BC084255
      UniProtKB/TrEMBL
      A0A974HVG4, Q5XH20
      Related
      ENSXLAP00005005991.1, ENSXLAT00005006097.1
      Conserved Domains (2) summary
      cd11764
      Location:435 → 488
      SH3_Eps8; Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins
      cd01210
      Location:48 → 174
      PTB_EPS8; Epidermal growth factor receptor kinase substrate (EPS8)-like Phosphotyrosine-binding (PTB) domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      61155114..61229457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018248397.2 → XP_018103886.1  EPS8-like 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0UH79, A0A974HVG4
      Related
      ENSXLAP00005005995.1, ENSXLAT00005006101.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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