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    lgals8.S lectin, galactoside binding soluble 8 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398442, updated on 18-Sep-2024

    Summary

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    Official Symbol
    lgals8.S
    Official Full Name
    lectin, galactoside binding soluble 8 S homeolog
    Primary source
    Xenbase:XB-GENE-866367
    Locus tag
    XELAEV_18028914mg
    See related
    EnsemblRapid:ENSXLAG00005007957
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    lgals8; xgalectin-VIIIa
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    Genomic context

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    See lgals8.S in Genome Data Viewer
    Location:
    chromosome: 5S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (33116705..33131045, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (33103258..33117643, complement)

    Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene HEAT repeat containing 1 S homeolog Neighboring gene actinin alpha 2 S homeolog Neighboring gene ADP-dependent glucokinase Neighboring gene heterogeneous nuclear ribonucleoprotein L like S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the Xenopus galectin family. Three structurally different types as in mammals and regulated expression during embryogenesis. Shoji H, et al. J Biol Chem, 2003 Apr 4. PMID 12538594
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lectin, galactoside binding soluble 8 S homeolog
    Names
    galectin family xgalectin-VIIIa
    lectin, galactoside-binding, soluble, 8 (galectin 8) S homeolog
    xgalectin-VIII

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001088925.1 → NP_001082394.1  lectin, galactoside binding soluble 8 S homeolog

      See identical proteins and their annotated locations for NP_001082394.1

      Status: PROVISIONAL

      Source sequence(s)
      BC129737
      UniProtKB/TrEMBL
      A1L2W2, Q7ZTB5
      Related
      ENSXLAP00005022782.1, ENSXLAT00005023484.1
      Conserved Domains (1) summary
      smart00908
      Location:23 → 147
      Gal-bind_lectin; Galactoside-binding lectin

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      33116705..33131045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018264265.2 → XP_018119754.1  lectin, galactoside binding soluble 8 S homeolog isoform X1

      UniProtKB/TrEMBL
      A1L2W2, Q7ZTB5

    2. XM_018264266.2 → XP_018119755.1  lectin, galactoside binding soluble 8 S homeolog isoform X1

      UniProtKB/TrEMBL
      A1L2W2, Q7ZTB5

    3. XM_018264267.2 → XP_018119756.1  lectin, galactoside binding soluble 8 S homeolog isoform X1

      UniProtKB/TrEMBL
      A1L2W2, Q7ZTB5

    RNA

    1. XR_001935841.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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