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    LINC01904 long intergenic non-protein coding RNA 1904 [ Homo sapiens (human) ]

    Gene ID: 388456, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01904provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1904provided by HGNC
    Primary source
    HGNC:HGNC:52723
    See related
    Ensembl:ENSG00000259837 AllianceGenome:HGNC:52723
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC01904 in Genome Data Viewer
    Location:
    18p11.32
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (926083..927993, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (1080399..1082307, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (926084..927994, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 8 pseudogene Neighboring gene MPRA-validated peak3036 silencer Neighboring gene uncharacterized LOC124904340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:907717-908438 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:909161-909882 Neighboring gene adenylate cyclase activating polypeptide 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:949337-949911 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:949912-950485 Neighboring gene uncharacterized LOC107985165 Neighboring gene Sharpr-MPRA regulatory region 14540 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:1011056-1012255 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:1015112-1015673 Neighboring gene uncharacterized LOC105371953 Neighboring gene solute carrier family 25 member 3 pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146724.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000894, BC039671
      Related
      ENST00000564872.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      926083..927993 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      1080399..1082307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)