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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_052857.1 RefSeqGene
- Range
-
11568..24482
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001270894.2 → NP_001257823.1 trafficking protein particle complex subunit 3 isoform 2
See identical proteins and their annotated locations for NP_001257823.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (2) is longer than isoform 1.
- Source sequence(s)
-
BC007662, CB053319, CD251784
- Consensus CDS
-
CCDS72758.1
- UniProtKB/TrEMBL
-
A0A087WWM0
- Related
- ENSP00000480332.1, ENST00000616395.4
- Conserved Domains (1) summary
-
- cd14942
Location:15 → 177
- TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex
-
NM_001270895.2 → NP_001257824.1 trafficking protein particle complex subunit 3 isoform 3
See identical proteins and their annotated locations for NP_001257824.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an in-frame downstream start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 3 and 4 encode the same isoform (3).
- Source sequence(s)
-
BC007662, BM451581, CB053319
- Consensus CDS
-
CCDS59194.1
- UniProtKB/Swiss-Prot
-
O43617
- Related
- ENSP00000480648.1, ENST00000617904.4
- Conserved Domains (1) summary
-
- cd14942
Location:1 → 123
- TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex
-
NM_001270896.2 → NP_001257825.1 trafficking protein particle complex subunit 3 isoform 3
See identical proteins and their annotated locations for NP_001257825.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site in the 5' coding region and uses a downstream in-frame start codon compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1. Variants 3 and 4 encode the same isoform (3).
- Source sequence(s)
-
BC007662, BG704657, BI462429, BI762992, CB053319
- Consensus CDS
-
CCDS59194.1
- UniProtKB/Swiss-Prot
-
O43617
- Related
- ENSP00000362256.1, ENST00000373162.5
- Conserved Domains (1) summary
-
- cd14942
Location:1 → 123
- TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex
-
NM_001270897.2 → NP_001257826.1 trafficking protein particle complex subunit 3 isoform 4
See identical proteins and their annotated locations for NP_001257826.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks two exons in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (4) is shorter than isoform 1.
- Source sequence(s)
-
BC007662, BG704657, CB053319, T26006
- Consensus CDS
-
CCDS72757.1
- UniProtKB/TrEMBL
-
A0A087WYS5
- Related
- ENSP00000482052.1, ENST00000616074.4
- Conserved Domains (1) summary
-
- cd14942
Location:15 → 103
- TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex
-
NM_014408.5 → NP_055223.1 trafficking protein particle complex subunit 3 isoform 1
See identical proteins and their annotated locations for NP_055223.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform (1).
- Source sequence(s)
-
BC007662, BG704657
- Consensus CDS
-
CCDS404.1
- UniProtKB/Swiss-Prot
- A6NDN0, B2RDN2, D3DPS2, O43617
- Related
- ENSP00000362261.3, ENST00000373166.8
- Conserved Domains (1) summary
-
- cd14942
Location:15 → 169
- TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex
RNA
-
NR_073097.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs at the 5' end and lacks two internal exons, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1.
- Source sequence(s)
-
BC007662, BG704657, BI462429, CB053319, HY104588
-
NR_073098.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks three internal exons, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1.
- Source sequence(s)
-
AA446176, BC007662, BG704657, CB053319
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
36136572..36156053 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
35999451..36018932 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)