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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032881.2 RefSeqGene
- Range
-
5002..35220
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_018475.5 → NP_060945.2 putative divalent cation/proton antiporter TMEM165 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript.
- Source sequence(s)
-
AF183409, BC107582, HY089602
- Consensus CDS
-
CCDS3499.1
- UniProtKB/Swiss-Prot
- A8K3P8, B4DHW1, Q9BTN9, Q9HC07, Q9NZ34
- Related
- ENSP00000370736.5, ENST00000381334.10
- Conserved Domains (1) summary
-
- COG2119
Location:96 → 317
- Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
RNA
-
NR_073070.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has an alternate 5' exon, compared to variant 1, which results in a frameshift and early stop codon. The transcript is sufficiently abundant to represent as a RefSeq record; however, the predicted protein is not represented because the product is significantly truncated and the transcript is a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF183409, AK295289, BC107582, HY089602
- Related
-
ENST00000508404.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
55395957..55453397
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011534394.4 → XP_011532696.1 putative divalent cation/proton antiporter TMEM165 isoform X1
- Conserved Domains (2) summary
-
- COG2119
Location:96 → 299
- Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
- pfam01169
Location:103 → 171
- UPF0016; Uncharacterized protein family UPF0016
-
XM_017008412.2 → XP_016863901.1 putative divalent cation/proton antiporter TMEM165 isoform X2
- UniProtKB/Swiss-Prot
-
Q9HC07
- Conserved Domains (2) summary
-
- COG2119
Location:33 → 254
- Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
- pfam01169
Location:180 → 249
- UPF0016; Uncharacterized protein family UPF0016
-
XM_047415962.1 → XP_047271918.1 putative divalent cation/proton antiporter TMEM165 isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
58884101..58941541
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054350501.1 → XP_054206476.1 putative divalent cation/proton antiporter TMEM165 isoform X1
-
XM_054350503.1 → XP_054206478.1 putative divalent cation/proton antiporter TMEM165 isoform X2
-
XM_054350502.1 → XP_054206477.1 putative divalent cation/proton antiporter TMEM165 isoform X2