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    LINC02749 long intergenic non-protein coding RNA 2749 [ Homo sapiens (human) ]

    Gene ID: 100506082, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC02749provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2749provided by HGNC
    Primary source
    HGNC:HGNC:54268
    See related
    Ensembl:ENSG00000254480 AllianceGenome:HGNC:54268
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.5), prostate (RPKM 0.4) and 6 other tissues See more
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    Genomic context

    See LINC02749 in Genome Data Viewer
    Location:
    11p15.4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (4187152..4202653)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (4252211..4267701)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (4208382..4223883)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4321 Neighboring gene ribonucleotide reductase catalytic subunit M1 Neighboring gene olfactory receptor family 55 subfamily B member 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:4199970-4200497 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:4200498-4201024 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3094 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:4210694-4210919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:4214784-4215284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:4215285-4215785 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:4225073-4225574 Neighboring gene RDX pseudogene 1 Neighboring gene SSU72 like 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047550.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX099155
      Related
      ENST00000525365.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      4187152..4202653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      4252211..4267701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)