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    C4h2orf68 similar to human chromosome 2 open reading frame 68 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691113, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C4h2orf68provided by RGD
    Official Full Name
    similar to human chromosome 2 open reading frame 68provided by RGD
    Primary source
    RGD:1587471
    See related
    EnsemblRapid:ENSRNOG00000011713 AllianceGenome:RGD:1587471
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C2orf68 (chromosome 2 open reading frame 68). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 62.5), Liver (RPKM 62.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C4h2orf68 in Genome Data Viewer
    Location:
    4q32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (105960543..105966509)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (104402553..104408317)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (100208612..100215824)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene atonal bHLH transcription factor 8 Neighboring gene uncharacterized LOC120102308 Neighboring gene surfactant protein B Neighboring gene ubiquitin specific peptidase 39 Neighboring gene transmembrane protein 150A Neighboring gene ring finger protein 181 Neighboring gene vesicle-associated membrane protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0561 protein C2orf68 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419524.1 → NP_001406453.1  UPF0561 protein C2orf68 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IAA4, D3Z8R8
      Related
      ENSRNOP00000095364.2, ENSRNOT00000099491.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      105960543..105966509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108708.2 → XP_038964636.1  UPF0561 protein C2orf68 homolog isoform X2

      Conserved Domains (1) summary
      pfam10573
      Location:4 → 92
      UPF0561; Uncharacterized protein family UPF0561

    2. XM_006236685.5 → XP_006236747.1  UPF0561 protein C2orf68 homolog isoform X1

      See identical proteins and their annotated locations for XP_006236747.1

      UniProtKB/TrEMBL
      A0A8I6AJH9
      Conserved Domains (1) summary
      pfam10573
      Location:4 → 126
      UPF0561; uncharacterized protein family UPF0561
    Nucleotide Protein Strain
    Heading Accession and Version

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