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    Tstd1 thiosulfate sulfurtransferase like domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100359478, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tstd1provided by RGD
    Official Full Name
    thiosulfate sulfurtransferase like domain containing 1provided by RGD
    Primary source
    RGD:2323815
    See related
    EnsemblRapid:ENSRNOG00000076904 AllianceGenome:RGD:2323815
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytoplasmic ribonucleoprotein granule and cytosol. Predicted to be active in cytoplasm. Orthologous to human TSTD1 (thiosulfate sulfurtransferase like domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 422.5), Liver (RPKM 176.8) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tstd1 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (86385679..86387315)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (83853421..83854875)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (89805652..89807355)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 30 Neighboring gene upstream transcription factor 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene F11 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of KAT, a novel gene preferentially expressed in several human cancer cell lines. Wenzel K, et al. Biol Chem, 2003 May. PMID 12817473
    2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytoplasmic ribonucleoprotein granule ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1; thiosulfate:glutathione sulfurtransferase
    Names
    rCG20339-like
    thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
    XP_002728074.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      86385679..86387315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002728028.6 → XP_002728074.1  thiosulfate:glutathione sulfurtransferase

      See identical proteins and their annotated locations for XP_002728074.1

      UniProtKB/TrEMBL
      A6JFZ6, A6JFZ7
      Related
      ENSRNOP00000112047.1, ENSRNOT00000150345.1
      Conserved Domains (1) summary
      cl00125
      Location:25 → 130
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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