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    HCG11 HLA complex group 11 [ Homo sapiens (human) ]

    Gene ID: 493812, updated on 17-Sep-2024

    Summary

    Official Symbol
    HCG11provided by HGNC
    Official Full Name
    HLA complex group 11provided by HGNC
    Primary source
    HGNC:HGNC:17707
    See related
    Ensembl:ENSG00000228223 AllianceGenome:HGNC:17707
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    bK14H9.3; CTA-14H9.3
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    Genomic context

    See HCG11 in Genome Data Viewer
    Location:
    6p22.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26521706..26527393)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26390105..26395792)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26521934..26527621)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986583 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17010 Neighboring gene RNA, U6 small nuclear 502, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17011 Neighboring gene tRNA-Leu (anticodon CAG) 1-7 Neighboring gene CRISPRi-validated cis-regulatory element chr6.1172 Neighboring gene tRNA-Thr (anticodon AGT) 2-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:26536291-26536790 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26536880-26537544 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:26537578-26537871 Neighboring gene tRNA-Arg (anticodon ACG) 1-2

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • HLA complex group 11 (non-protein coding)

    Clone Names

    • FLJ14049, FLJ30357

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026790.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121936
      Related
      ENST00000411553.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      26521706..26527393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791780.1 Reference GRCh38.p14 PATCHES

      Range
      67886..73573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      26390105..26395792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)