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    SPCC1450.15 putative pig-F family GPI synthesis protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539289, updated on 17-May-2024

    Summary

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    Gene symbol
    SPCC1450.15
    Gene description
    putative pig-F family GPI synthesis protein
    Primary source
    PomBase:SPCC1450.15
    Locus tag
    SPCC1450.15
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See SPCC1450.15 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    2
    Sequence:
    Chromosome: III; NC_003421.2 (1761158..1763220)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene serine/threonine protein kinase Cek1 Neighboring gene uncharacterized protein Neighboring gene riboflavin synthase Neighboring gene ER protein folding oxidoreductin Ero1b Neighboring gene putative triacylglycerol lipase Neighboring gene miscRNA Neighboring gene guanyl-nucleotide exchange factor Ste6 Neighboring gene putative central kinetochore-associated family protein Neighboring gene putative ATP-Mg/Pi carrier protein Neighboring gene putative meiotic recombination protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article
    2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables 3-dehydrosphinganine reductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to mannose-ethanolamine phosphotransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables phosphoethanolamine N-methyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in 3-keto-sphinganine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in GPI anchor biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in sphingolipid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative pig-F family GPI synthesis protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1761158..1763220
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023304.2 → NP_588314.2  putative pig-F family GPI synthesis protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588314.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9Y7P2
      Conserved Domains (3) summary
      cd08939
      Location:13 → 251
      KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
      pfam00106
      Location:14 → 202
      adh_short; short chain dehydrogenase
      pfam06699
      Location:324 → 490
      PIG-F; GPI biosynthesis protein family Pig-F
    Nucleotide Protein
    Heading Accession and Version

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