U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00460 long intergenic non-protein coding RNA 460 [ Homo sapiens (human) ]

    Gene ID: 728192, updated on 15-Oct-2024

    Summary

    Official Symbol
    LINC00460provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 460provided by HGNC
    Primary source
    HGNC:HGNC:42809
    See related
    Ensembl:ENSG00000233532 AllianceGenome:HGNC:42809
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00460 in Genome Data Viewer
    Location:
    13q33.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (106376564..106378595)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (105596926..105598957)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (107028912..107030943)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 38 Neighboring gene uncharacterized LOC107984626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:107001137-107001784 Neighboring gene Sharpr-MPRA regulatory region 6229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7980 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7981 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:107028450-107029649 Neighboring gene uncharacterized LOC124903246 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:107075540-107076185 Neighboring gene ribosomal protein L35 pseudogene 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034119.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL136159
    2. NR_163477.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL136159
      Related
      ENST00000435024.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      106376564..106378595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      105596926..105598957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)