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    F54D10.7 Ubiquitin-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173728, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F54D10.7
    Official Full Name
    Ubiquitin-like domain-containing protein
    Primary source
    WormBase:WBGene00018808
    Locus tag
    CELE_F54D10.7
    See related
    AllianceGenome:WB:WBGene00018808
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables identical protein binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F54D10.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (3820145..3821296, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene DUF38 domain-containing protein Neighboring gene Skp1-related protein Neighboring gene Glycosyltransferase family 92 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Coordinate regulation of lipid metabolism by novel nuclear receptor partnerships. Pathare PP, et al. PLoS Genet, 2012. PMID 22511885, Free PMC Article
    2. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Walhout AJ, et al. Curr Biol, 2002 Nov 19. PMID 12445390
    3. Functional identification of microRNA-centered complexes in C. elegans. Hebbar S, et al. Sci Rep, 2022 May 3. PMID 35504914, Free PMC Article
    4. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    5. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ubiquitin-like domain-containing protein
    NP_494661.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      3820145..3821296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062260.6 → NP_494661.1  Ubiquitin-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494661.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9TZ84
      Conserved Domains (1) summary
      pfam00240
      Location:189 → 251
      ubiquitin; Ubiquitin family
    Nucleotide Protein
    Heading Accession and Version

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