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    bcf-1 bacterial colonization factor [ Caenorhabditis elegans ]

    Gene ID: 3564957, updated on 12-Jun-2024

    Summary

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    Gene symbol
    bcf-1
    Gene description
    bacterial colonization factor
    Locus tag
    CELE_F57F4.4
    See related
    AllianceGenome:WB:WBGene00019017
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in membrane raft. Is expressed in intestine. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See bcf-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (6401379..6408783, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Filaggrin-2-like Neighboring gene HotDog ACOT-type domain-containing protein Neighboring gene ET module Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. f57f4.4p::gfp as a fluorescent reporter for analysis of the C. elegans response to bacterial infection. Julien-Gau I, et al. Dev Comp Immunol, 2014 Feb. PMID 24012871
    2. Galectin LEC-6 interacts with glycoprotein F57F4.4 to cooperatively regulate the growth of Caenorhabditis elegans. Takeuchi T, et al. Biol Pharm Bull, 2011. PMID 21720028
    3. An analysis of the Caenorhabditis elegans lipid raft proteome using geLC-MS/MS. Rao W, et al. J Proteomics, 2011 Feb 1. PMID 21070894
    4. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. f57f4.4 expression is specifically induced in the intestine upon bacterial infections, but not in response to abiotic stress.
      Title: f57f4.4p::gfp as a fluorescent reporter for analysis of the C. elegans response to bacterial infection.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane raft HDA PubMed 

    General protein information

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    Preferred Names
    bacterial colonization factor
    NP_504627.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class bcf

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6401379..6408783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072226.9 → NP_504627.1  bacterial colonization factor [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504627.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94247
      Conserved Domains (1) summary
      pfam01684
      Location:1401 → 1480
      ET; ET module
    Nucleotide Protein
    Heading Accession and Version

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