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    Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310362, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Rimoc1provided by RGD
    Official Full Name
    RAB7A interacting MON1-CCZ1 complex subunit 1provided by RGD
    Primary source
    RGD:1305938
    See related
    AllianceGenome:RGD:1305938
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305938
    Summary
    Predicted to be located in cytosol and nucleoplasm. Orthologous to human RIMOC1 (RAB7A interacting MON1-CCZ1 complex subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 98.2), Brain (RPKM 93.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    2q16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (54917383..54931577, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (53189787..53203981, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (53813129..53827329, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene F-box protein 4 Neighboring gene 3-oxoacid CoA transferase 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1, pseudogene 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in mitophagy ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    RAB7A-interacting MON1-CCZ1 complex subunit 1
    Names
    UPF0600 protein C5orf51 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395104.2 → NP_001382033.1  RAB7A-interacting MON1-CCZ1 complex subunit 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A0G2JVL5, A0A8I5ZKP0
      Conserved Domains (1) summary
      pfam17716
      Location:36 → 290
      DUF5561; Family of unknown function (DUF5561)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      54917383..54931577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017590858.3 → XP_017446347.1  RAB7A-interacting MON1-CCZ1 complex subunit 1 isoform X1

      Conserved Domains (1) summary
      pfam17716
      Location:36 → 241
      DUF5561; Family of unknown function (DUF5561)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001134548.1: Suppressed sequence

      Description
      NM_001134548.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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