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    MACROD2-AS1 MACROD2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100379174, updated on 22-Oct-2024

    Summary

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    Official Symbol
    MACROD2-AS1provided by HGNC
    Official Full Name
    MACROD2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:37193
    See related
    Ensembl:ENSG00000235914 AllianceGenome:HGNC:37193
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BA318C17.1; NCRNA00186
    Expression
    Restricted expression toward testis (RPKM 3.1) See more
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    Genomic context

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    See MACROD2-AS1 in Genome Data Viewer
    Location:
    20p12.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (14884253..14929518, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (14933964..14979243, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (14864899..14910164, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene mono-ADP ribosylhydrolase 2 Neighboring gene MACROD2 intronic transcript 1 Neighboring gene NANOG hESC enhancer GRCh37_chr20:14695990-14696491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17553 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:14840969-14841588 Neighboring gene ribosomal protein S10 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17554 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:14900087-14900936 Neighboring gene RNA, U6 small nuclear 1159, pseudogene Neighboring gene RNA, U6 small nuclear 115, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • MACROD2 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037841.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and contains two alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL138808, AL161800
      Related
      ENST00000455291.2

    2. NR_072988.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL161800, BC039528, HY015789
      Related
      ENST00000439451.1

    3. NR_110318.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon and contains an alternate 3' exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      BX417920, HY015789
      Related
      ENST00000664409.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      14884253..14929518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      14933964..14979243 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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