HAR1A highly accelerated region 1A [Homo sapiens (human)] - Gene

Summary

Official Symbol: HAR1Aprovided by HGNC
Official Full Name: highly accelerated region 1Aprovided by HGNC
Primary source: HGNC:HGNC:33117
See related: MIM:610556; AllianceGenome:HGNC:33117
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: HAR1F; LINC00064; NCRNA00064
Expression: Broad expression in brain (RPKM 1.1), testis (RPKM 0.4) and 21 other tissues See more
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Genomic context

Location:: 20q13.33

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	20	NC_000020.11 (63101292..63104386)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	20	NC_060944.1 (64903342..64907432)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	20	NC_000020.10 (61732644..61735738)

Chromosome 20 - NC_000020.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The expression profile of HAR1A and HAR1B in the peripheral blood cells of multiple sclerosis patients.
Title: The expression profile of HAR1A and HAR1B in the peripheral blood cells of multiple sclerosis patients.
Long noncoding RNA HAR1A regulates oral cancer progression through the alpha-kinase 1, bromodomain 7, and myosin IIA axis.
Title: Long noncoding RNA HAR1A regulates oral cancer progression through the alpha-kinase 1, bromodomain 7, and myosin IIA axis.
In the first study between HAR1A gene and schizophrenia no significant association was found.
Title: Rapid evolving RNA gene HAR1A and schizophrenia.

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

highly accelerated region 1A (non-protein coding)
highly accelerated region 1A (non-protein-coding RNA)
human accelerated region 1, forward
long intergenic non-protein coding RNA 64

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.