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    Slc35f2 solute carrier family 35, member F2 [ Mus musculus (house mouse) ]

    Gene ID: 72022, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Slc35f2provided by MGI
    Official Full Name
    solute carrier family 35, member F2provided by MGI
    Primary source
    MGI:MGI:1919272
    See related
    Ensembl:ENSMUSG00000042195 AllianceGenome:MGI:1919272
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500009K05Rik
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is expressed in several structures, including alimentary system; central nervous system; early embryo; genitourinary system; and nose. Orthologous to human SLC35F2 (solute carrier family 35 member F2). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in genital fat pad adult (RPKM 29.1), large intestine adult (RPKM 19.0) and 12 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Slc35f2 in Genome Data Viewer
    Location:
    9 A5.3; 9 29.12 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (53678733..53725445)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (53771433..53818161)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene cullin 5 Neighboring gene STARR-positive B cell enhancer ABC_E10546 Neighboring gene STARR-seq mESC enhancer starr_24147 Neighboring gene predicted gene 16124 Neighboring gene ribosomal protein S6, pseudogene 3 Neighboring gene STARR-positive B cell enhancer ABC_E1114 Neighboring gene RAB39, member RAS oncogene family Neighboring gene STARR-seq mESC enhancer starr_24150 Neighboring gene STARR-seq mESC enhancer starr_24156 Neighboring gene sarcolipin Neighboring gene SIVA1, apoptosis-inducing factor pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. PEG3 binds to H19-ICR as a transcriptional repressor. Ye A, et al. Epigenetics, 2016 Dec. PMID 27824289, Free PMC Article
    2. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
    3. Deterministic and stochastic allele specific gene expression in single mouse blastomeres. Tang F, et al. PLoS One, 2011. PMID 21731673, Free PMC Article
    4. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 35 member F2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028060.3 → NP_082336.3  solute carrier family 35 member F2

      See identical proteins and their annotated locations for NP_082336.3

      Status: VALIDATED

      Source sequence(s)
      AK005182, BB729203, CD551889, CD554029
      Consensus CDS
      CCDS40639.1
      UniProtKB/Swiss-Prot
      Q7TML3, Q9DB62
      Related
      ENSMUSP00000046528.9, ENSMUST00000048670.10
      Conserved Domains (3) summary
      pfam00892
      Location:196 → 331
      EamA; EamA-like transporter family
      pfam06027
      Location:35 → 334
      SLC35F; Solute carrier family 35
      cl23754
      Location:74 → 240
      EamA; EamA-like transporter family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      53678733..53725445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511461.5 → XP_006511524.1  solute carrier family 35 member F2 isoform X2

      Conserved Domains (1) summary
      pfam06027
      Location:48 → 347
      SLC35F; Solute carrier family 35

    2. XM_006511460.2 → XP_006511523.1  solute carrier family 35 member F2 isoform X1

      Conserved Domains (1) summary
      pfam06027
      Location:92 → 389
      SLC35F; Solute carrier family 35

    3. XM_006511462.4 → XP_006511525.1  solute carrier family 35 member F2 isoform X3

      Conserved Domains (1) summary
      pfam06027
      Location:1 → 287
      SLC35F; Solute carrier family 35
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7TML3.2 GenPept UniProtKB/Swiss-Prot:Q7TML3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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